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13-0548-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 72629 [Map]; Strand: w
      • AT4G00170.1 - [+] show detail - Plant VAMP (vesicle-associated membrane protein) family protein
        Distance: -418; Region: promoter
      • AT4G00180.1 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon7 (3UTR)
      • AT4G00180.2 - [+] show detail - Plant-specific transcription factor YABBY family protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 13-0548-1 - 5-prime edge 
    TGGTAAAGCC TAGCTAGCTT AGCTACTGCA TGCTTTTGAT ATTAAATATA 
    TAACACGGCA ACTGAGAAAA CAATATATTT TCAATTCCAA GAGAAAATTC 
    TAGTAGTTCC GGAAAATTTC TTTAAGAAAA AAAAAANGGG NCCCCGGNNN 
    NNTTNNNAAN TTTNNNAAAA NNGNANNAAA AANGTNANNT TGGNCCNNNA 
    ANGNNCCCCC TTTTGNAAAA TNCCAAAAAA NGGGNAANGT NTTCNNNCNT 
    GGTNNGGGNC CCCCCCACNG NGGGNGGNGN ACCCGAAAAN CCCTTTTTTN 
    CCNANANNCC NNNCCTNNCT TTCNTTNTTN NCCCNAAAAA AAAATTNNNG 
    NATNNNGTTN GGNNNANNAN GGCNGNCNGN CCCCNANTTT NANCCNTTGN 
    AAAAAAAAAA NNNGGGGGGN NNNNANAAAG AACCCGGGGG GNNCCNGTNA 
    CCCTTTTTGG GGGGGGGNGG GNCNCCCTTA ATCCCAAGGG NTNGGGGGGG 
    GAANNNNCCC CCCGGT

AT4G00170.1

Model type
Protein coding
Short Description
Plant VAMP (vesicle-associated membrane protein) family protein
Computational Description
Plant VAMP (vesicle-associated membrane protein) family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PapD-like (InterPro:IPR008962), Major sperm protein (InterPro:IPR000535), Vesicle-associated membrane protein (InterPro:IPR016763); BEST Arabidopsis thaliana protein match is: vesicle associated protein (TAIR:AT3G60600.1); Has 1100 Blast hits to 1071 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 430; Fungi - 141; Plants - 437; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.1

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 469 Blast hits to 469 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 442; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00180.2

Model type
Protein coding
Short Description
Plant-specific transcription factor YABBY family protein
Curator Summary
YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades.
Computational Description
YABBY3 (YAB3); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: fruit development, abaxial cell fate specification, regulation of transcription; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), YABBY protein (InterPro:IPR006780); BEST Arabidopsis thaliana protein match is: Plant-specific transcription factor YABBY family protein (TAIR:AT2G45190.1); Has 465 Blast hits to 465 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 6; Plants - 438; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR