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13-0478-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6039359 [Map]; Strand: c
      • AT1G17560.1 - [+] show detail - Ribosomal protein L14p/L23e family protein
        Distance: -667; Region: promoter
      • AT1G17580.1 - [+] show detail - myosin 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0478-1 - 5-prime edge 
    CCCCAGATGA GGAGATTAGA GCAGAATCAA TCAACTTGTG GAGAGACTTG 
    AGAGTGATAA AGTCAATGAC TTTTCACCGG AAATCTCAGG AAAGGAAAGC 
    CCTTTTTTCT TCTCCGGTGA GAATTTGGTA ATCTCTCTCT CTTATCGCGG 
    TGGAGAGTTT AAAAAAAAAA GGCGTTTCNT NGGACCNCCN NTNGGAAAAC 
    CCNTTNGGGG GGTTTNATTT NGNCTNTNGT CNGANNCAAA TTACTAGGGG 
    GNCCCAGGGC TACCTTNAAA ANGGNCGGCN TCGGGNAATT GTNCCNCTTG 
    ATCANCCTNT TNTNANCCGT TNAACTTNTT GATTTAGGAA TTTTTCATAA 
    CATTAAAAAA CTTNGGATTT TGNCTTTGNA AANNCNTGAN CANTCANCAA 
    AAGTAAAANG TNCGTACCAA AAAAAAAAAA AAAAAAANNG TTNGTTTTTA 
    GGGCACCCCC ATNGTTTNTT TTNGNAAATA AAAANTTCNA ATTTTNGGGA 
    NAANNAAANN GTTTTTTNTN CCNTNGGAAA AAAANNTTTG GGCCCCNGGT 
    TTTAAAATTG NNGGAAAATN GGGGNNNTCC NAAAAAAANG GAAAANCNTN 
    NGGGGGGGGA TTNAANCCNG CCNGGGNNAN CCCCNNTANN TTTTTTTTTN 
    NCCCNAAAAN NCNTNGGGNC CCCNCTTTTT NAAACNCNCC CCNTTTTNTT 
    TTNNNTTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6039475 [Map]; Strand: c
      • AT1G17560.1 - [+] show detail - Ribosomal protein L14p/L23e family protein
        Distance: -783; Region: promoter
      • AT1G17580.1 - [+] show detail - myosin 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0478-1 - 3-prime edge 
    ATCTGGGGTC TTTCCCCTCT TGCTATTCAA ATGGTAAATT CAAATATATC 
    TCTATACCAT TTTATGTTTC TAAGAGATAT CTCGGTCTCT TTGCTCAACT 
    GTTTATTTGA AAACTGAAAA CCTTGCTTGT TTGTTTCGTT AATGTTGTTG 
    TTGCAGTTTG CTTGCTTTAC CCCTTTTTGT TTCCTGTATG GAGACGCTAA 
    TTCTTGATCT ATGGTTGTTT TTACTTCTGA AAGGTTTTGG TTTGACTATG 
    TCTAGCTCAG TTCTAGAAGC T

AT1G17560.1

Model type
Protein coding
Short Description
Ribosomal protein L14p/L23e family protein
Curator Summary
Mutant shows abnormal ovule development
Computational Description
HUELLENLOS (HLL); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14, bacterial-type (InterPro:IPR005745), Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT5G46160.2); Has 9401 Blast hits to 9401 proteins in 3194 species: Archae - 306; Bacteria - 5487; Metazoa - 280; Fungi - 278; Plants - 760; Viruses - 0; Other Eukaryotes - 2290 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G17580.1

Model type
Protein coding
Short Description
myosin 1
Curator Summary
Encodes a member of the type XI myosin protein family involved in organelle trafficking and overall plant development.
Computational Description
myosin 1 (MYA1); FUNCTIONS IN: motor activity; INVOLVED IN: in 8 processes; LOCATED IN: myosin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 18995 Blast hits to 13821 proteins in 1312 species: Archae - 114; Bacteria - 980; Metazoa - 11844; Fungi - 1348; Plants - 1046; Viruses - 13; Other Eukaryotes - 3650 (source: NCBI BLink).
Link
InterPro Scan - TAIR