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13-0082-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19896 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 13-0082-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTTA GTCACATACA TACATATATA TATTCCATCA 
    TAATTATTTA TTTATATGTA TAGGCTTCTC ATGAATTATG ATATTATACG 
    TATTACGTAC TTTAAAAATA TGTGGTCGTA ATTGGATAGA GAAAAATAAA 
    TAATGGTTAT GTTTGAGTGA ATTAGTAACA TCACTCCACG TCTCCACCAC 
    ATCCACAAAT GAACTCCAAA TTTTCTAGAT CAATATACGA ACAGTAGATA 
    ATCCTTCGTT TTCACGAATT TAATTATGTG ACTGAGGATA AGTGAAAAGT 
    GGAAATGGAG TAGACACAAT AGCATATGCT TTGTCTGCAA AATTCCACAA 
    TAATTTGTTG ATAATGTTAT TGAATTTATT TATAATGCTA CAAGAAACAA 
    AAAGAAAGCG AATGTTTATT TTTTAAAGGT GCTGTAAAAT GATTGGGTGT 
    TAACAGGTCA ACTTGGCCCC GACCATTACC ACACGTTTGT GAGTGAACAA 
    GTCATATTAT TATTAATAAC GAAAAGTGAC TCGAAAATTC ATGAGAAAAA 
    TGCCAAACTC AACTACTCAA GTAAGTATAA GTATACTGTT TACACTATAT 
    AGTAATCAAT CGTCACCACA AATTAAGCCC TATATTTGTC GTTTTACTAA 
    TAAACGAACG TACAAATACN ATATATCACT CAACTTTGAT TTANTTNGAG 
    ATGTTGNGNG TACTTAATTA CATAAATGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 19891 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon6 (3UTR)
    Flanking Genome Sequence: 13-0082-1 - 3-prime edge 
    NTTTAAAACG GCAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATAA 
    CACATATATA GACGTAAACT ATATAGAGGT GTTTGAGTAA TAATCATTTT 
    GGATTCGAAG GAGGAGGAAG TTGTTGTTGC ATTTGCTGAT ATAATGTAGC 
    CATCCTGCTA TACGCTTCCA TCGTCGTTGG CNTGCAATTC CAAATATATA 
    AAAATATAAA TGGTACTGAA GCATTGTTTA GACCCAAGTT GTATATCTAT 
    ATATAGAAAA AGGGTCAACC TGAGTAGAGC ATNNTGTATC TGGGAAGAGA 
    TCACCAGCCC GGNCCGNCGA CCACGCNTGC CCCTATATTG GAAGAAGCAT 
    CCCACGATGG ACAATTCATG GGCAAAAATG GGTTTGGCAT CATGTTGGCA 
    TGGATATTAG GAGCGCTTGC AGCAGCTCGG TTCATAGAAT TAAGGTCGAG 
    GAGACCGAGA CCGGGCATCC CCATGCCCAT CCCTAAACCC ATGGGATTGG 
    ACATGAGAGA CATTTGTAGT TGTTGTTGTT GCTGCATGGC CATAGGAAGC 
    ATCATANAAG GCATATTCAT TCTGCTCATC ATGCTCACTT GTGCTTGAAG 
    TTGCTTCAAA TACTCTATCA CTTCATCCAA CATAGATGCT TTATCCGTCT 
    ATAGTTCCAA AATTAACGAT TTATATATCA AGCCTCTTTG GTATCTACTA 
    TAATTAACCN AACCAATGTT ACNGANCATG TGTGNAATGN ANATNGNGNN 
    GATTTTNGAG TCAACCACCC NGGCCNTNA

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR