1. Home
  2. Mutant Lines
  3. 12-5616-1

12-5616-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 114107 [Map]; Strand: w
      • AT4G00250.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -141; Region: promoter
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: -864; Region: promoter
    Flanking Genome Sequence: 12-5616-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT ATATGTAACA CTGTAACATG GGAAAAAAAA 
    ACAATTTTTT GCCCAAATGT ATAANAAATT TGTATAACAA AATTCATACT 
    ANATTTTCTT GTTGTAATTC TTGGTATACA AAATGAAAGG TTTCTTTGTT 
    GTAAAACAAA AATATATGTA CTAAAAGTAA TTTTACAAAG TCGCCTTTAT 
    ATTTTTACAT TTANAAAGAT CATTTGATCA AGTGGGAAAC CTTTATTGAA 
    ATTAACAAAG NGGAAAANAT TGTAAGTAGT GAAATTTAGN GTCATCTATA 
    GACAAAAAAA ATGTAAATTA AAATTTAGGA ATATNAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 114035 [Map]; Strand: w
      • AT4G00250.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -69; Region: promoter
      • AT4G00260.1 - [+] show detail - Transcriptional factor B3 family protein
        Distance: -936; Region: promoter
    Flanking Genome Sequence: 12-5616-1 - 3-prime edge 
    ATTTTGTTGG GCTTAATTAG TTTTTGTTGT TGAGCTTTAT TTACTTTAAT 
    TGTTTCTTAA ATATAAGAGA TGTTACAGTG TAAAAAAATA AAAAGTCTCG 
    CAACTCACAA ACCCTAAAAT TGTCCCTTCA GTTCCCACTT TGTACTCATA 
    CCCGAGAATC TGAAAGAAGA AAATCCAATG GCTCCTTTGG AAAGTCCAGC 
    AACCGCTTCT TCAAGCGAAG TTGAGAGTTC TTCTGAAGAG ATCTCCAAGT 
    CTTCTTCTGC AGAAAGCAAA CCCAAAGATC CTGTCACAGT TCCTTCCTCT 
    AAAACCCTAA AATCTCCTTC CGCCGCTGTG AATT

AT4G00250.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT4G00238.1); Has 626 Blast hits to 580 proteins in 96 species: Archae - 0; Bacteria - 6; Metazoa - 135; Fungi - 97; Plants - 294; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00260.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
maternal effect embryo arrest 45 (MEE45); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT2G24645.1); Has 539 Blast hits to 263 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR