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Mutant Lines
12-5256-1

12-5256-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 217236 [Map]; Strand: c
- AT3G01540.4 - [+] show detail - DEAD box RNA helicase 1
  Distance: -565; Region: promoter
- AT3G01540.1 - [+] show detail - DEAD box RNA helicase 1
  Distance: -565; Region: promoter
- AT3G01540.2 - [+] show detail - DEAD box RNA helicase 1
  Distance: -565; Region: promoter
- AT3G01540.3 - [+] show detail - DEAD box RNA helicase 1
  Distance: -570; Region: promoter
- AT3G01550.1 - [+] show detail - phosphoenolpyruvate (pep)/phosphate translocator 2
  Distance: 0; Region: exon8 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGAC 
CAATATCATA TACGATACCT ACAACAACAA CCCCAATTTT TATGTGTTGA 
TTAGAAGCCT AACACTAACC GACTTTACAA AATTCAGTAC AGTTTTTCTG 
AAACGGAGGA ACTAGACGGA CCAACCTGTT GGTAGCTATG CAAGCAAACA 
CCAGCAAGTA GAGACATGAT GCAAAACTCT TTTACCGACA AACCCTGGCT 
TGTCTGTCAA GCAACCACAT ACAAACACAC ATTAGTTCTT TCTCTTTTAG 
ATCATCTAGC TATATCGGTT TATGCTTTTC CACTTACTGC TACTTGTAAA 
TGCGAAGGAG TAACCTTGAA CCCATCGATG AGGATTGCTA AAGGAACCAG 
TAAGATAAAG GAGATAATGG TTATTATAGA GAAAAGGTTG ATGTTGTCCA 
AAGCGTCCTG TTTCAATATA CAAACATTAA TAGATTTCGA TTACTAGTTT 
CTTTCTTGAN ATCATAAGGA TAACTTATAT TCAAACTCTT TTACCTTTCC 
AACCATGAAT TTTTTACTGA GGACATTGCG TGATTGATTC GTCACATTAG 
AAGCCATTGC ACTGCANAAA CCAATCCTGG TTTATCCCAA TACCATGAAT 
TAATCAAATC AATTAAAACT TCATCAAAAG TTTATCAAGA ATACTATTTT 
TTTNGTNCTT GTNCTTGGNG GGNCATACCA ATTGAAAGAA GCTACCANCC 
CGGGCCGNNG ACCACCN

AT3G01540.1

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 49839 Blast hits to 48969 proteins in 3110 species: Archae - 949; Bacteria - 26028; Metazoa - 6650; Fungi - 4984; Plants - 2792; Viruses - 23; Other Eukaryotes - 8413 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01540.2

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 50187 Blast hits to 49315 proteins in 3135 species: Archae - 949; Bacteria - 26432; Metazoa - 6592; Fungi - 4988; Plants - 2789; Viruses - 23; Other Eukaryotes - 8414 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01540.3

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01540.4

Model type: Protein coding
Short Description: DEAD box RNA helicase 1
Curator Summary: RNA HELICASE DRH1
Computational Description: DEAD box RNA helicase 1 (DRH1); FUNCTIONS IN: ATPase activity, ATP-dependent RNA helicase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), WW/Rsp5/WWP (InterPro:IPR001202), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase family protein (TAIR:AT5G14610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01550.1

Model type: Protein coding
Short Description: phosphoenolpyruvate (pep)/phosphate translocator 2
Computational Description: phosphoenolpyruvate (pep)/phosphate translocator 2 (PPT2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: integral to membrane, chloroplast, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Glucose-6-phosphate/phosphate translocator-related (TAIR:AT5G33320.1); Has 2511 Blast hits to 2510 proteins in 289 species: Archae - 8; Bacteria - 55; Metazoa - 551; Fungi - 395; Plants - 1226; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).
Link: InterPro Scan - TAIR