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12-4850-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4789770 [Map]; Strand: w
      • AT5G14810.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-4850-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TCTTATATGA GCCGCTCACC CAAAGAGTGT GCTTATCAGA 
    AAAGAGAGTG ATGATTATCA GAAAGAAGCT CAACATGTTT CAAGTAATGC 
    TGCAGGAACT TCTATGATTA ATGATGGTAA TTGCATGATA GGTAATGATG 
    GAGATCGATT CCTTAGTGGT TCAGACTTGG TAGAGAATGC GGTTGCGACG 
    GTGAAGAAAT ATTTGGTTGA AATTGATGAT GCTGTGTCTA GTGATGATGA 
    TCAAAATTCG GATGCTGGGG ACGTATTTGG ATTCAACATA GAAGAGTGTG 
    AAACAGATTC ATGGATTGAA CATAAGCCGT TGATTCAAGA TCAAGCCGCG 
    TTTCACTCCA TAGACATAGA AGGTGTCTCA CAACTTCAGA AGGTTCGTTC 
    AAACCTTAAG GATTTTGATA AAGTTGATGC AACAATGAAT CAAATGCTGT 
    CATCAATTGG ATTTGTTGTT GATGAATTAC ACTCTAGTTG TGGAAGTGCT 
    ACCGNCCATG TCCAGAAGAA GCCTANTAAG TCTCTCAAAT CCTGGAAGTN 
    NAAATTTAAA ACCNGCTCNC ANGACCNAGG GGATCNTGAN TNACTTCCAN 
    GGGGGGNTNN NTNTCGNATN CNANNCCTGG AATTTAANTT CGGGGANTNG 
    AAATTNCNNN NNNNGNGNNA ACTGGGTTTN CNNNNACNNT TNNANNNNNG 
    GNNNNANANN ANAAANNTNN NNNNAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4979965 [Map]; Strand: w
      • AT5G15330.1 - [+] show detail - SPX domain gene 4
        Distance: -523; Region: promoter
    Flanking Genome Sequence: 12-4850-1 - 3-prime edge 
    CATGAAATAA CATCACAGAA TTATAATAGC TTTATCTAAA GTGGCTCTTA 
    ACCAGATCGT CAACCTGAGA TGAGCCTCTG ACGAGCTTGA ACGGGCATGC 
    ACCTATAATA AAATAGAAAG AACCAAAAAA ACTATTGAAT AATATTCGTT 
    ATATTCCAAT AGATTAGATT CGTCTTCCCA TATAATGAGA TTCCCTTATA 
    TTTTACGTAT AACTATAAGC GGATC

AT5G14810.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
retrotransposon family
Link
InterPro Scan - TAIR

AT5G15330.1

Model type
Protein coding
Short Description
SPX domain gene 4
Computational Description
SPX domain gene 4 (SPX4); CONTAINS InterPro DOMAIN/s: SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX domain gene 1 (TAIR:AT5G20150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR