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12-4808-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23907100 [Map]; Strand: w
      • AT1G64385.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 4819; Region: intergenic
      • AT1G64390.1 - [+] show detail - glycosyl hydrolase 9C2
        Distance: -4019; Region: intergenic
    Flanking Genome Sequence: 12-4808-1 - 3-prime edge 
    NTTTGAAAAC GGCAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    CCGTAAGTAT GTGAATGTTA AAAGCACCCC CAAAAAAAAC GAATAAACTA 
    AAGATATAAA AAAATTAAAT TTATTTCCAG TAAATAAATT AGTAGCATTT 
    AGTAATCACT TTTATTACTA CTTTATTAGG TTTGACATTC ACNGTATGCA 
    ATCAAAAGTC ATGGTGGGAA GTGGGAAATA TTTTATTAAC TGGATCACCT 
    TCAAATATCA AAAAGTAGCT AGTATTTTTC CATCTATATC ATACACAAAT 
    TTCCCATGAT TTGAACAAGG TGATAACATA ACNGGTAACA AGTATGAACT 
    ACTATTAAGT TACAAACTCT GATAATAAAC TATATTGTAT CATTGTTACC 
    AATGATAATA CTAAGTTTTC TTATTATAAT CGATCCACAT TAGTTAGACA 
    ACTGTTTACT TTGTTACCAA TTAAAAATGG CAATTATTCA TGCAGAATTT 
    TTAGGTGTTC TCATCATGTA GTTCTTGTTT ATTTTAATCG TTGGGGATCA 
    ACTANACTAC TAGAGTGTAA ATAAATGGTT ACAATGGGGT TTTTTTTNGG 
    GGTCCAAANG GANAGTTGAC NTNTATTNTC NCCTAAAAAC TGATNACCCT 
    CCTTTNGAAA ATNANGTTCC TTCTTGNAAA ACCATGTTAT ATTTACNCAA 
    ANAACCAANC CTAATNGGAT TCTAAACCAA CTCANGNANC AATNNNAGCT 
    ANTTCAATNC CCNTAAAC

AT1G64385.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G64390.1

Model type
Protein coding
Short Description
glycosyl hydrolase 9C2
Computational Description
glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR