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12-4680-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 469450 [Map]; Strand: c
      • AT4G01080.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 26
        Distance: -1156; Region: intergenic
      • AT4G01090.1 - [+] show detail - Protein of unknown function (DUF3133)
        Distance: 1065; Region: intergenic
    Flanking Genome Sequence: 12-4680-1 - 3-prime edge 
    GGACCAGCCC AGATGGTCTC ATTGTCCTTG TGTTTATTAA TCACATACTA 
    GGAATAACTT GAGTTTTTTT TTTTNAATTT ATGGNAAAAA CCNCATNCCC 
    NGNTTTNGGN CCNNACNCCT TTNNTNTNNT CGNGGGTNGT NTCTCNNNAN 
    CCTTTCNTTN CANNAANNTN ANCCTTTNTT TTNAATTTTN GNAACTTAGN 
    TNNCNCCNCC NTNCCCCNCT TTTTTNANNA NNTNTNGGGT TNTTNAAAAN 
    NTNGNTNTNT TNGGNAATNA CCANCCNGGG CCGNNAACCN CCCGNGCCCT 
    AAANAAAAAA NNGGATNT

AT4G01080.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 26
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 26 (TBL26); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 25 (TAIR:AT1G01430.1); Has 1341 Blast hits to 1324 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1336; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01090.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3133)
Computational Description
Protein of unknown function (DUF3133); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3133 (InterPro:IPR021480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3133) (TAIR:AT1G01440.1); Has 1545 Blast hits to 1451 proteins in 231 species: Archae - 0; Bacteria - 62; Metazoa - 476; Fungi - 316; Plants - 452; Viruses - 2; Other Eukaryotes - 237 (source: NCBI BLink).
Link
InterPro Scan - TAIR