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12-4296-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18190543 [Map]; Strand: w
      • AT4G39040.2 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
        Distance: 0; Region: exon1 (5UTR)
      • AT4G39040.1 - [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-4296-1 - 5-prime edge
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCACC AAACACTCTC TAACTTTGGT TTCTGGTTTC
    TTTTTATTAT AATAAACCCT TTCAAATATG ATTATTTCAC AATTAAGACC
    CTAAATGTTT GATTATTTAG AAAGTAATCT CACCTAAGTA TCTCACGGTT
    CAGATTGCNG CCGTGGTTGT TTTGGGTCGT TGTATAATGG GCCAAATTAG
    GCCCAATTCG ACCCATTTAA AAAATGATAT TCTCTCCTTC TTTTTTGTTG
    GTGGGTCACT CAACAATGAC ATTCTCTACT GTTTTGCACA CGCTTTCCTG
    CTAAAACAAA TTAAAATTGG TACGGACCGA CACAAATCAG AGATTGATGA
    CGAATTTTTA TAAAACATAA TTTAATATTT GATAGATTGT CTTTTTCTAG
    CCTTATTAAT TTCCATTTCA GGTATGTTTA AGCTAGTAAT TNACTAACAC
    CACCTTTTTT TTTGGCTTTN ACNAANNCCN CGTATGGNNN AATTTNCTCT
    TTAATTGGNA CATTNNCAAN CAGGGGAATT NAAANATCNC CCCACGGGGC
    NNGNGAAAAA AAAAAANCNT CCCCGGNGAG CNANCNGGGC ANAANGCTAA
    AAAGGGCNTT TGAAACTNCT NANCTTCNAA AAACAGGNNC TTTTTTTTNA
    TNNAAAAACG GGATTNNTTN CNTCAAAANN NTTTNNGNGN ANTAAATTAA
    NAAATNAGAG GGGGGNAGA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 36761 [Map]; Strand: c
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon10 (3UTR)
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: -323; Region: promoter
    Flanking Genome Sequence: 12-4296-1 - 3-prime edge
    NTNCNGNNNT TTNNNNNGCN ATTTGNNNNN GNTGNCAGTC TTTTACTNGA 
    CCGTTACCGA CCGTTTTCAT CCCCTACAAC ACTCACAGTC TTNTATGTTT
    TCCAAATTAA GGAAATTTAA AAAGCACACA ACANCACTAA GAAATATGAA
    TCGATTAAAA TTATTATACG CATTTTGNCT TCTTTGTATN AGAAAAATGA
    TAGTACTACA TACNTATGGT AATTTGGTAA ATAATACAAA AAGAATCTAC
    ACANCCAANT GAAAAATCAA AAATGTGTCT GGTCGTGGAC TCCGATGGGN
    TTTTTGAGGC ANATTGAANA CTGGGCCNGA AATATGAAAG GCCCACGTAN
    GTCCNGAATA TAACCTAAAA AGCACACTCT NTAATAACAN CCANAATTAN
    GGTTNCCTCT CTTGNCTCNA NNAGTCANTG CGCATCCCGT AGGANAANAG
    TNNNAGNAAT NTNNCNNCAT GGGNCNGATG TACAGTCNAG GGNTTNNCNC
    NCNNTNTNNN NNNTNGTTNA CATTNTAGNT NACGTGCNAT TTGAANAGAN
    NTAACTTNNA GAANACTCAT TNNGTANCGA NNNNGGCNAT NCGAGNCCNT
    NGNNGTCGAC TTTTCAAGTA CNANNACCNN TCAGACCNCA CNCANCANNA
    CNCNNGCANA NAGNTNAGNC NNCNANNCTN TCNCTCATTN GTNNNNATNT
    NCNNNNCATC AANNTNAGTA NNNCGCNTNN CNGANNNANN ACAACTTAAC
    NACNTTTGNN TANGNTNTNA AAAAANANAN TACCNTNTTN NGNCNCNAAA
    GNANNNCGAT CGNCCNANCA CAAAN

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00100.1

Model type
Protein coding
Short Description
ribosomal protein S13A
Curator Summary
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description
ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39040.1

Model type
Protein coding
Short Description
RNA-binding CRS1 / YhbY (CRM) domain protein
Computational Description
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7881 Blast hits to 5506 proteins in 1409 species: Archae - 38; Bacteria - 2320; Metazoa - 2599; Fungi - 454; Plants - 297; Viruses - 197; Other Eukaryotes - 1976 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G39040.2

Model type
Protein coding
Short Description
RNA-binding CRS1 / YhbY (CRM) domain protein
Computational Description
RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7808 Blast hits to 5439 proteins in 1394 species: Archae - 38; Bacteria - 2293; Metazoa - 2592; Fungi - 448; Plants - 290; Viruses - 198; Other Eukaryotes - 1949 (source: NCBI BLink).
Link
InterPro Scan - TAIR