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12-4287-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3119656 [Map]; Strand: c
      • AT3G10113.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -265; Region: promoter
      • AT3G10114.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-4287-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCAAATCA GCTTGTGAAT CTTTTGATCC TTGCTTCGTG 
    ATCAAACCTC CCCATTTAGG ATCATACAGA AAGCCGTTAG GTTTGAAGCT 
    ACCATCTAAC CACGGCTCAA TCATGTTCTT CAGGTAACGC GGATAACTAG 
    AATTTGAATT ATTATCATCT TTTCTCCCAA ACGTCATGAA ATCCGCCAAT 
    AGACTGTACG CTTGAGCTCT GTATCTCTCT CCCCACAAAG GATCAAACTT 
    AGCGAGCACG GCAATAGCGT AGAGAAAGTA ACCAATATGG TAATGATGAT 
    TATAATATAT ACCGAACCCG AAATCAGCTT GTTTCCATTT CAGGATCGAA 
    GTGAGGAACT AAGCAGCAAT GTAGAAAATG GAAGTTGCAA TTCCAATGAA 
    GGAATTAATC CTGAAACCAG CAGTCATTGG ATTGAAAACG TTGTCAAGGT 
    ACTATATGTT TTGTCACAAC TTTGGAGAAG AGACAAATTT CAGATTTTGC 
    CAGTGGATCT TACCTCTCCT CTGTGTATTG TTCTTCAAGG TTAGGAAACC 
    GTACACAGTA ACTAAGCANA NAGAGAAGTG GAGTGAGGAA GAGCATGATA 
    GGTTTCTTGA AGCTATCAAG CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11137509 [Map]; Strand: c
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -1086; Region: intergenic
      • AT4G20800.1 - [+] show detail - FAD-binding Berberine family protein
        Distance: -2100; Region: intergenic
    Flanking Genome Sequence: 12-4287-1 - 3-prime edge 
    CTGATTTCGG GTTCGGTATA TATAAGAGAT AAGTTGAGAA CTAGGCAGTT 
    TTTAGGGAAA TAATTTGAGA ACTAGACAGT TTTTTTAAAA ATAGGCTGAT 
    AGGGTAGTTT CTTCTGTCCT CTCTAATACA GCCCTCCTCT AATACAGCAA 
    ATAGTCAAAG ACCGTTTTAC CCCTCTTGTG TTTTGATGAA AACTAATGGG 
    CCAAATTCAA ACCAGCCCAA TATCATTCAA AATTCAAGAT TTGTCATGGG 
    CTAATATCAC AAAACTCAAA CCCATTTGTC CTCAAGACAT TGAAACCAAA 
    CATAAACTTA TCTCCTAAAC CCTCGTTGAA CATAAACTTC TCTCGTCGTC 
    GACATCTTCT CTGAAGTCGT CATTGTCAAA AGAAGATAAA CCCTCGTCAC 
    TTCGAAAATC ATACACACAT TGTCAAAATC TGTCGAGATG GAAGGTATGA 
    GTTATCATAA GAAGCT

AT3G10113.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G18330.2); Has 1478 Blast hits to 1458 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 27; Plants - 1117; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10114.1

Model type
Pseudogene
Curator Summary
pseudogene of glycosyl hydrolase family 81 protein
Link
InterPro Scan - TAIR

AT4G20790.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20800.1

Model type
Protein coding
Short Description
FAD-binding Berberine family protein
Computational Description
FAD-binding Berberine family protein; FUNCTIONS IN: oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, synergid; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4385 Blast hits to 4167 proteins in 621 species: Archae - 36; Bacteria - 1918; Metazoa - 13; Fungi - 1639; Plants - 666; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Link
InterPro Scan - TAIR