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12-4161-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22076445 [Map]; Strand: w
      • AT1G59970.1 - [+] show detail - Matrixin family protein
        Distance: 1569; Region: intergenic
      • AT1G59980.1 - [+] show detail - ARG1-like 2
        Distance: -4344; Region: intergenic
    Flanking Genome Sequence: 12-4161-1 - 5-prime edge 
    TATTCCATAA ATCTACTTAT CGTTTTGATG TAACTAGTAT CTTTTTATTT 
    TCTTAGGAGA GTGTATTGTA ATTCTTCTTA AACACTTTAC TCTTACCAAT 
    TTATCATGTA TCAATATTAA TTAGTACNGG CACAATAGTA TAATTGACAT 
    AAGAATGCGG AAACAACATA TAGTCCACGC TGAAATCAAT GAAGTAAGAA 
    AACGGAAACT TAATTCATTC GCAAACATAA CATTATTTGT TATACAAAAA 
    TGAAAATAAC AGATATTAAC TATCAAAACA AACACAACCA ATTCATATAG 
    TCATGCAGAT CGAAATTATC AATCAGACGA TATATTTATC AATCTTGCAA 
    AGAAACAAAA ACAAAGATTT TACAATTAAG AGAGATGAAG ATCGGACCGT 
    AATGCTTTCA TTCCCCAGAA GAAGAGATGA GATGGGATTC AGATTCAGAC 
    AATAATACCT ATCGATGTAA CCTTTTCTTT TCCCCAAAAG AAGTACACAT 
    CAAATTCCCA CCATCATGGA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22604091 [Map]; Strand: w
      • AT5G55850.3 - [+] show detail - RPM1-interacting protein 4 (RIN4) family protein
        Distance: 0; Region: intron2 (CDS)
      • AT5G55850.1 - [+] show detail - RPM1-interacting protein 4 (RIN4) family protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G55850.2 - [+] show detail - RPM1-interacting protein 4 (RIN4) family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-4161-1 - 3-prime edge 
    TTGTTACGGG GNACTTANGN ATTTACTTTT GACCGCAANC TCNTCGCTNG 
    TCTATCCTTT NAGCTCCCAA ACAATTCTTC AGGATCTAAC ACTCCTACAA 
    TACCAAAGNG GTAAACCTCA TTGGAATCAT ATAATTTAAC ATTTTGTTTC 
    TACACAAAAA CAATCTATAG GAAATAGGAA GAAACCAGGG TTGGTGGAAA 
    AAGCAGTGTC CCAGGCCAAG CTTAATCAAT CAAATTCNNA AAAAGATCAA 
    AACTTGAATA AAACCCGAGA TCCAGAATCA GGATTATCAG ATTCAACAAC 
    AAGACAATAG CTCATCAGAA TCACAATTTC ACATCTGTTT TTCTATTTAA 
    TCTANGATTT TCAGCGGAAA TAAAAGAAAC AACAAAAACC CTTCAATCAA 
    AACGAAACAT AGANTCATCT AACTCACCAA AACGAAACTA AAATTCTAAA 
    AACCAAACAA ATCGAATTAC CAGGCCCGGG CNCGTCGACC ACTGCNTGCN 
    NNATATANAG ANGTTTTNNC GNGNANTNGC CNNTNGGNTA TTNANCNNNA 
    ACGNTGNTGN GGTNNCTTTC TGCNNNANAG GNNGGNNNNA NTTCTNGNGT 
    NNNNGGGCCC CCCTCNNCNG CNNNNCNNNA CNNGNNNNNN NNGNGCNGNA 
    TNNTGTCNTT ATNNTTGTTN NNTGGTNCCA CNNNCNANCT CCTNGCNTGC 
    GGTCCNNNGC CCNCNCCCTT TNTNNNACCN CCCCNNGCCT GTTTNNTCAT 
    NCCCCCNCNG NNTTTGTTCT GTCCGCNNTC CNTGCCCGNG GTGCTGCNTN 
    CCANCANGCC ATANNGNNNC NCNNANATNN AAAANA

AT1G59970.1

Model type
Protein coding
Short Description
Matrixin family protein
Computational Description
Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G59980.1

Model type
Protein coding
Short Description
ARG1-like 2
Computational Description
ARG1-like 2 (ARL2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, leaf whorl, carpel, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 1 (TAIR:AT1G24120.1); Has 25507 Blast hits to 25492 proteins in 3344 species: Archae - 188; Bacteria - 10073; Metazoa - 4427; Fungi - 2514; Plants - 2606; Viruses - 73; Other Eukaryotes - 5626 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55850.1

Model type
Protein coding
Short Description
RPM1-interacting protein 4 (RIN4) family protein
Curator Summary
NOI protein
Computational Description
NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 284 Blast hits to 283 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55850.2

Model type
Protein coding
Short Description
RPM1-interacting protein 4 (RIN4) family protein
Curator Summary
NOI protein
Computational Description
NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 285 Blast hits to 284 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G55850.3

Model type
Protein coding
Short Description
RPM1-interacting protein 4 (RIN4) family protein
Curator Summary
NOI protein
Computational Description
NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1).
Link
InterPro Scan - TAIR