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12-4054-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11110523 [Map]; Strand: w
      • AT4G20720.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: 2470; Region: intergenic
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 1240; Region: intergenic
    2. Chromosome: 2; Position: 57856 [Map]; Strand: c
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -9506; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 849; Region: intergenic
    Flanking Genome Sequence: 12-4054-1 - 3-prime edge
    CCCTGATGAA NNCCTATGGA NGCTNGGCNT NGGNCTGGGT NACCNANANN 
    GNCCGGTATA CCANNCGTGC NCNATAANTG AAATTATTAA AAGAATACAN
    NANNCTANGG CGTGACGGAT NACGCAGTGC CNNNNNAGTC NGACCACAGC
    NGTGCCCNTA TAGGATTGAA CNATGGTTAG ACTCCCTGGA AGAGCTNATC
    TACGGGGCAA TCCGGGAANA CTTCACACGT NNCCCGGTTC ATNGGAATCT
    GACGGGAAAT CGCCGAGCAA ATAAACCGAT TGGATTGACT TGGCTTGATG
    AGCGTTNACC GAAAACTTGG ATGAGTAATA TACCNANGAN AGTNTGTTGA
    TTCCCCNTAT NTGNAGCGCC ANTNTGCNNA TTCTGAAANT ACANAANNAN
    TATNTTNTAA AGGGTGTAAA NAAANNNACT GNANTATNTN TNNNNATNNA
    NNNGNNCAAA NGANTNANTG AANANANGAA CAATGNANCT ANGANACAAA
    NTNNGGNGNN TNGNNNTNNA ACNNTGAANA ANNCNNGGGN CNNNAGNNNN
    GNNTNNNNGN GNAGCANNNA CNGGNNCNAA NNNNTANCCA NGNTNTGNGT
    ANNANAGNNN NNNNNANANN NNNNTNNANN NNNNNTTNAA GTNNAAATAC
    NGNANNNANA NNNNNNATNN AANNGAAANC NNTNCANTNN ATTTNTNNNN
    NCNNTNANAT NNNNNNTCNG NNAGNTNANT NNNTNTNNTA TTCATTAATA
    CNAGNNNTNN GNAAGNNANA ANNAAANTAA N

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G20720.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT1G05090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR