Home
Mutant Lines
12-3967-1

12-3967-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 1954251 [Map]; Strand: w
  - AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
    Distance: -4462; Region: intergenic
  - AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: 739; Region: intergenic
Flanking Genome Sequence: 12-3967-1 - 5-prime edge
```
GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGAAGCA 
AATAAAAATA ACAAGTCTAA CTAACACACT GGGAGCACAA TTATTACGTC 
CTGGATCAAC TATTTTATTA CATTATATCG TGTTTGTAAC CGACATTGAT 
ATTTATAAAT AAGAATGTGG CAGTTAATTA GGAATAACCA TCTTTTTTTT 
TGTCAAGGAA TAACCGAATC TATATACAAA TGAAATGAAA GAGCACAAAA 
ATTCCAAAAA GAAGCT
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 1954218 [Map]; Strand: w
- AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
  Distance: -4429; Region: intergenic
- AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: 772; Region: intergenic

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
AAGGATTAGA TTAAGAAAGG ATAACCGACA ATTTAATTTT AAACAGAATT 
TTAGACAAAC AATGTATAGT CGTAATCTGC GGTGGTTTTA TTGTTTAAGA 
TGATTTGTTA TGTGGATCGA AACCAAGATT ATAGTATTTC TATCACGACT 
TTAACCAATG TGAACAACTC AAGAAAACAA AAAACAAAAA CAAAAAAGAG 
TTTTTCTATA TATGATTGAT AAATTTAAAA GTTGCTACAT AAATTTAAAA 
GTTGCTTGAT AAATTTCAGT ATTTTACATT GTGAATGAGT ACAACTCTGC 
TATTTGGGCC AGATTGGGCC TCTAATTTAA TAGATTCACA GCTACAGTTT 
GAAGCT

AT3G06410.1

Model type: Protein coding
Short Description: Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description: Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06420.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link: InterPro Scan - TAIR