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12-3840-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24025097 [Map]; Strand: c
      • AT5G59640.1 - [+] show detail - transposable element gene
        Distance: -895; Region: promoter
    Flanking Genome Sequence: 12-3840-1 - 5-prime edge 
    ACAAGGGCCA ACGTGGAGTT TATTAGAGTC AACCTATAGA AGAAAAATAA 
    AAACAGATCA ATGATAATCG AATAAAGAAA CAATAAACCA AATAAAAACA 
    GAAGATGCTA TTATTGAAAG AAGGCTACNG TCTATATCTT CGACGCCGAC 
    TATAACTTGT TCAATTTTGA GAATATGTGG GGATGCTAAA TCCTATTTAT 
    AGTTTTATTA GTATCCACAA ATTTTATTTG ACTAAATCCT TGTTAAATTT 
    CTTTTCCTAA ATTTAAGCAA TATCTATTGA ACTGACGAAA AAAAAGAATA 
    TCTATTTAAC TAAACAAAAT TCAAAACTCT TTTGATCTCT CACTTCCATT 
    TGCTGATTTA TTTTGGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24025213 [Map]; Strand: c
      • AT5G59640.1 - [+] show detail - transposable element gene
        Distance: -779; Region: promoter
    Flanking Genome Sequence: 12-3840-1 - 3-prime edge 
    GCCCTTGTTG TGTCCATCCC GTCTCGCCGT TTGAAACGTA TTCGTTGTTC 
    GCTCCATCAG TCCAATCCGT CAAAGTTGGA GAGAAAGGTA TTCCAACAAA 
    CCCATGTCTC ATGTTTGTTA ATGATTTAGG TTGATATGAA AATAAAACCC 
    TAACATAAAC CAAGCACAAA CCAAATTAAA TCAACAGATT CTTAGACTAT 
    TATACGAAAA CTTGATTATA AAGGAATTGT CTGTCACGTA TAAGAATCGT 
    TAAACCGAGA CTATTGTTGA TTGTATTTCT CTCGGTTTTA TTTTTATCTA 
    TTTAGTTGCA GGTACTAATA TCATTGTTTG CGTATAAAAG TTTTATAAAA 
    GTTTTCGTAT AAGAATTGTC GTATAATTGT CGTATAATAG TCTAAGAATT

AT5G59640.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR