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12-3550-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11650271 [Map]; Strand: c
      • AT4G21960.1 - [+] show detail - Peroxidase superfamily protein
        Distance: -1809; Region: intergenic
      • AT4G21970.1 - [+] show detail - Protein of unknown function, DUF584
        Distance: -3109; Region: intergenic
    Flanking Genome Sequence: 12-3550-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAC CCCAGAGACT CATTTGGCGA CACTTGGATA 
    AGGAAACAAA GTGTCGGTGG TCACAGTTCA TTCATTTTTA ATTGAAAAAA 
    TCAAATTTGT TCATTTAAAA AAAAAATTGG AAAATCCAAA TNTCCAAATT 
    TGAAGNGAAT TTGAATCTGC ANATTCAATG NGATCTTGGT AAAAGCNCCG 
    ATNCTTCCCC CAGATGAAAA AAAAANTAAA AAAANTTNTG GGNTTAAAAA 
    AANAAAAAAA ATCNATTTAN TNGTANNGCC CNCNCNTTTN NNANCTNNGT 
    NCCNTNTTTN TTNAGTTAAA TCNTTNNAAN NAAAATTNNC CCTTNNTTCC 
    NGAACCNAAA ANCNTANTNN TNCCCNANNA AANAANAGGG GNCCCTTNAC 
    CTTTAAATNA AANNTCNANT TNNCCNNTTT NAAANTTGGT TAAAAATTNN 
    AAAAANACCN TATTNCCAAA TTTTTTTNAN TTTNGCGGGG NNNTNTNNNT 
    TNCCCTNTTT NCCTTNTTAN TTTTNGGNAA AAATTCNAAA ANANCGTTTT 
    TNTTAAAACN TNGGAAANGN NCAAAGTGTC CNCNAANCGG NNTCCANTTT 
    TNANCTTCCC CCCCNAAACC GNNNNAGGTT TTTNGGGANC CCNCAAAANN 
    GAAAAGGGGG NACCGGNTTT NTTTGGNNNC CNNGGGNTCA AAANTNTTTT 
    NANTTTTNGN AAAAANTTTN ACNAACCCAA NTTTNNNGNA ATTTCNANAN 
    NANGNNAAAA AAGGNGGNTN TTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11666106 [Map]; Strand: c
      • AT4G22010.1 - [+] show detail - SKU5 similar 4
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 12-3550-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TTAGATCCAT TAATGAACTT TGATATTAGA ATTATGTTTG ATGTATTTCA 
    TATTTTCTTG GATAACAGTA TGGATGGAGG ACAATGGACT CCCGGAAGCC 
    GAGCAAAGTA CAACCTGCGG GACGCGGTTT CACAGGTCCA CCGTTCAAGT 
    ATATCCGAGG GCATGGACAG CGATCTACAT AGCGTTGGAT AATGTTGGGA 
    TGTGGAACAT AAGGTCGGAG AATTGGGCAA GACAGTATTT GGGGCAACAA 
    TTCTATCTTC GAGTTTACAC TTCCTCTACT TCGTACCGAG ATGAATATCC 
    ACCACCAAAG AACGCTCTTA TGTGCGGACG AGCTAGAGGC CGCCACACTA 
    GGCCATTCTA AAAGGGATAT TGGACGCAAC GGCTCAACTG TTTTTTTTTT 
    NTTNGTTTTT TNAAATNGAA NNATTNNAAA NGTTNANTNT NGNCNCAAAA 
    GGGNGGCAAA AAAATGNNAC CTTCGGGGNT TTNTTCANTN CGGCCCAAAA 
    NTTAGNANCA AAAAAANTTN GGANCTNGAN TTGANCTTTC AACTTANTTT 
    TTATNACAAA ATCAAANGTG GGGTNCTNAT TTTAAATAAN CAAATNATTT 
    TGTTTTANTA CCCCTCAGGG GATCTATAAT TTTCATTCNC TATTTNACCT 
    GCAAAGTTGG AAATNACCTA NTTAAAAATA ANTANTNTNN TTGAAACTCG 
    NCAAAAATGG GAAAAAATGA AGTAAAGGGA TTTGGAACTT TAATTAGGAA 
    ATTTTG

AT4G21960.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Curator Summary
Encodes AT4g21960 (AT4g21960/T8O5_170).
Computational Description
PRXR1; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G37130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21970.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF584
Computational Description
Protein of unknown function, DUF584; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF584 (InterPro:IPR007608); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF584 (TAIR:AT4G04630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22010.1

Model type
Protein coding
Short Description
SKU5 similar 4
Computational Description
SKU5 similar 4 (sks4); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 5 (TAIR:AT1G76160.1); Has 5236 Blast hits to 5188 proteins in 961 species: Archae - 4; Bacteria - 1473; Metazoa - 274; Fungi - 2031; Plants - 1319; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Link
InterPro Scan - TAIR