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12-3024-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3518031 [Map]; Strand: c
      • AT5G11080.2 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron9 (CDS)
      • AT5G11080.1 - [+] show detail - Ubiquitin-like superfamily protein
        Distance: 0; Region: intron8 (CDS)
    Flanking Genome Sequence: 12-3024-1 - 3-prime edge 
    GTCGTAGACA TACACATAAA CGCAAAGGCA TCTACAAGCT AATTCGTCTT 
    AAAAATATTA ATCAGATACA TATGTACACA CTTGTGTTTC TCCCATGCTA 
    ATTCTTGAGG TGCCATGGCC TAACGCAAGA ATTGAACTTC CTAAGTGACA 
    CAAGAGGCTT CCTGATTCAA CCACTCTTTC TTGCCGCAAT CTTCGGGCTG 
    ATGGGTCCGT AACATTTACT TGATCCACAA GCAACATTGA AATATTCTGC 
    ACAATGAAAA CAATTTTATC CCAAAATCAA AAAACATATA ATGGAATGTG 
    GTAAAAACTC GATTCAAGAG AAGAAGACAA CATACTGATA AACATTCAGC 
    AACTTCACCA ATCAACAATC GCCTTGTCGT ATGTGCCAAC TCCCCCCAAT 
    GACATTCTCT TGCGATCAGA TCCTCCCTGG AACGGTTAGG AGCTTGCCAG 
    TTGTTATCAT CATTGTTACC TAGAAAATTC ACAATACAAA ATGTCCNCAG 
    AAATTCAGAG ATTTTATTTC AACTAAATNG AAACCATGTC TAACCNTATG 
    TAGCAAAACA CTNGGCTTAT ACGATCCAGA TGTCGANNAT AAGGTTGTGA 
    TANAATCTGG AATCACCTTG CCGGANTGAC CANTAAATAT AATTTTTATG 
    NGCTANGNTA AAAANGTGCG GTCCCCTTGA GAATTTNATG ANANCCTTTT 
    NNAATGNCTT TNCACNGATG GGNGTATCAT ATCCTTNTTN AGANANANG

AT5G11080.1

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11080.2

Model type
Protein coding
Short Description
Ubiquitin-like superfamily protein
Computational Description
Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT5G25270.1).
Link
InterPro Scan - TAIR