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Mutant Lines
12-2610-1

12-2610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 36987 [Map]; Strand: w
- AT4G00100.1 - [+] show detail - ribosomal protein S13A
  Distance: -97; Region: promoter

CATACATATG GTAATTTGGT AAATAATACA AAAAGAATCT ACACAACCAA 
GTGAAAAATC AAAAATGTGT CTGGTCGTGG ACTCCGATGG GCTTTTTGAG 
GCAAATTGAA AACTGGGCCA GAAATATGAA AGGCCCACGT AAGTCCCGAA 
TATAACCTAA AAAGCACACT CTCTAATAAC AGCCAGAATT AGGGTTTCTC 
TTTGTCTTCA GCAGTCAGTG CGCATCCGTA GGAGAAAAGT GTGAGAATCT 
GCCACCATGG GTCGTATGCA CAGTCGAGGG TTTGTTCTTC TTCTTCGTCT 
TCTTCGTATT ATAGTTACGT CAATTGTGAA ATCTAACATA TCGCTATCAT 
TTATGTAGAA AGGGTATTTC AGCCTCTGCG TTGCCTTACA AGAGATCGTC 
TCCAAGCTGG CTCANGACCA CCTCTCAGGA TGTAAGTTGA TATCATCTCT 
ACTTTTTTGC TCTGCTTTGT TGAATGAATC ATGCCTTCAC ATTATTATTA 
TTACATTTGA CAGGTTGATG AATCAATCTG CAAATTTGCC AAAAAGGGAT 
TGACCCCTTC CCAGATTGGT GTGATTCTCC GTGACTCTCA CGGTATCCCT 
CAGGTCAAGA GTGTTACTGG AAGCAAGATC TTGAGGATAC TCAAAGCTCA 
TGGTGTGTTT TTAATTTCCC AATCTTTCGT TCTGCATTTG TCATTTTGGC 
TTATGATGTT AATGTCATAT TCATACACTT GCAAGGCCTT GCTCCT

3 prime edge [+] show sequence

Chromosome: 4; Position: 36871 [Map]; Strand: w
- AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: 0; Region: exon10 (3UTR)
- AT4G00100.1 - [+] show detail - ribosomal protein S13A
  Distance: -213; Region: promoter

TATGTATGTA GTACTATCAT TTTTCTGATA CAAAGAAAAC AAAATGCGTA 
TAATAATTTT AATCGATTCA TATTTCTTAG TGTTGTTGTG TGCTTTTTAA 
ATTTCCTTAA TTTGGAAAAC ATAGAAGACT TGTGAGTGTT GTACTAGTCC 
TATGAGCAAA ATTCAAAACT TCAGAAGTTA AAAGACACTT GGTAACAAGA 
AGGACTTTAA ACCACCCTTC ATTTGATCCC AACTTGGGAC TCGAAACAAA 
ACCTATTAGA GTTTTTTTCC TCGCAAGTTG TACCGTTTAA ATACGCCTCA 
TGTCATCAAG GGACTACGTG TATGCGAGAG CCTACAAAGA TTGCGACTTT 
GGAGCTTCCC ACAGCTTCAC TTTCTTGTCA TCGCCTGATG TCCCCAAAAC 
CATGGCATGT CTTTCCCCTG AGAACCAACA ACACCACATG AGATTCAGAT 
CACATACAAC TTTACATACA AGAAAGAATT AGACAGGCAC ATACCAACTG 
TAATAGCCTT GGGTGCCCAA GATATGCATG TGATATCCCC TGCACATACA 
ACCAACCGTG GTAAATTTAC TATCACTTGT TTGAATAGTT TTGAGGTATA 
TGTTAAGGTT TTGAATAGGT TGCAAAGAGA AATGTTGAGA GCTATCTATC 
ACCTTCGTGG GCTTTCTCAG CTGTGTCCAA GACATTTCCA GTTTCAGCAC 
ATAACCACTG CAATGTGGAA CCATGGCTTG CTGCCAATAT CTTTCCCTCT 
GGGGCATAAG CTGAGA

AT4G00090.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00100.1

Model type: Protein coding
Short Description: ribosomal protein S13A
Curator Summary: Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description: ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link: InterPro Scan - TAIR