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12-2508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 13467949 [Map]; Strand: c
      • AT5G35205.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-2508-1 - 5-prime edge 
    AAACTTACAC ACCTCTGTTT TGCGGATGAC TTGATGGTGT TTGTGAAAGG 
    TCAAAAGAAA TCAATTGAGG GAACTTTAGA GGTGTTCAAC CGACTTTTCA 
    AAGCACTCGG GACTACAGAT TAGTCTTGAG AAATCTACTC TCTATATGGC 
    AGGTGTTCCC GATACACAAA AGGAAGAGAT TCTCCAACAG TTTCCTTTTG 
    ATTATGGAAC ATTACCGGTG AGATACTTGG GTCTTCTTTT ACTCACAAGA 
    CGGATGACAG CTTCAGATTA TCTACCTTTG ATAGAAAAAA TCAGATCGCA 
    AATCAACTCT TGGACGGTTA GAGCTCTCTC CTTTGCTGGG AGATTTCAAC 
    TGATAAGCTC GGTGATTTTT AGTCTCACAA ATTTCTGGAT CGCAGCTTTT 
    AGGCTGCCAA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1462211 [Map]; Strand: w
      • AT1G05090.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: -991; Region: promoter
    Flanking Genome Sequence: 12-2508-1 - 3-prime edge 
    ATTAGTAAAA CCCGAGATCA GCATGTGATG ACTCACACTC ACTATTAAAA 
    TCCTAAACAA AAAGCT

AT1G05090.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2; Bacteria - 2631; Metazoa - 338; Fungi - 185; Plants - 102; Viruses - 1; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G35205.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.1e-36 P-value blast match to GB:BAA20419 reverse transcriptase (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR