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Mutant Lines
12-1880-1

12-1880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 54637 [Map]; Strand: w
  - AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: -1188; Region: intergenic
  - AT4G00150.1 - [+] show detail - GRAS family transcription factor
    Distance: 2562; Region: intergenic
Flanking Genome Sequence: 12-1880-1 - 5-prime edge
```
AGTGTATATG TACGGTGTNT ACAACTTAAG CAATATAAAG GCCTGCATAG 
AGATGGAAAT AAACATGTGT AGAGTTTGAT GATCTAACAT TAATAANGGA 
TTCCACCTGT TACAGAATCT TGATGAACNT TGAGTAGAGT TTGTTTATTG 
AAATAAATAN ACTAACTAAN AAAATAAATG AAGTACCTTG TAAAGTGAGA 
GGTTGAGGAG CANATATGGN GGGCAAGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 54521 [Map]; Strand: w
- AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -1072; Region: intergenic
- AT4G00150.1 - [+] show detail - GRAS family transcription factor
  Distance: 2678; Region: intergenic

TATACACTTC ACTACTCTTA TTATCTAGTT CCATATTACG CTATATATTT 
ATGAATTTAT ATACATAGAC CATACTCATG TCCTTGAAAA TCAGTTACAT 
GTTTCTTTTG TTCTTATCTT TAGTCTTTTG TGTTTTCTCT TTTGGCCTTT 
TTTCTTCCTT TATCTATTTA CAAGTCAAGT CAGCTTATTA ACAACGCGGN 
ATTTCCATCC CCACAAAATC TTCTTATGGC TACTTTTATA TATATATACA 
TATCAAACTA TACTGACGAC AAAATAAATA AATTAAGAAA AAAAAAAANA 
NAANGGGGGN GNGGGCCANN CNTTNTNTNN CNAATAACNC NNNNNANACC 
ATNCGCATNG GGCTNNNNNC TTNCTTGATT NNANCATATA AANGAAANGG 
GGNAAACTTC CTTATTTTTN NGTGGANCGA CNACNCAANN GGGTGNGNAN 
AAAACANAGT TGGNTNCNCG CNAAGNCGGG CGNANNNTCC CNCAGNAACA 
CATTCNTNAN TTNTNAAAAA AANANTTGGG GANGAGCCGC GNNAANANCN 
CNNNGNGNNN NGNNANCCTT TTNGGGGANN ANNNTTNGNA AANCCTACGA 
GANTNAANAT TNTGCNCGNC GCNCGNNANA NGGNAANAAC ANNCGTGGNN 
CCCTNCACGG NNNNTGANGT TAAAAANNAN AACCGANNCN TGGANNCTCN 
AANGANANNA GNNNCCCANG NNNANNNGGC TNGNANGNNG AGNAANNANG 
NGGGGGANNN NNANNCNCCA N

AT4G00140.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00150.1

Model type: Protein coding
Short Description: GRAS family transcription factor
Computational Description: HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR