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12-0909-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 54590 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1141; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2609; Region: intergenic
    Flanking Genome Sequence: 12-0909-1 - 5-prime edge
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC TGGTTGTATA CACGTACATA TACACTTCAC
    TACTCTTATT ATCTAGTTCC ATATTACGCT ATATATTTAT GAATTTATAT
    ACATAGACCA TACTCATGTC CTTGAAAATC AGTTACATGT TTCTTTTGTT
    CTTATCTTTA GTCTTTTGTG TTTTCTCTTT TGGCCTTTTT TCTTCCTTTA
    TCTATTTACA AGTCAAGTCA GCTTATTAAC AACGCGGTAT TTCCATCCCC
    ACAAAATCTT CTTATGGCTA CTTTTATATA TATATACATA TCAAACTATA
    CTGACGACAA AATAAATAAA TTAAGAAAAA AAAAAAAAAA AAGGGGGGGG
    GGGCCANGCN TTNTTTNACN AANAANANGT TTAANNCNNT TNGNATGGGG
    CCCCCNCCTN CCTGGNTNGG ATCNTNTAAA ACAAAGGGGG GAAACTTTTT
    TNTTTNGNNG GGNGGGGANN CCCAATNGGG NGGGANAAAA NNAATNTGTT
    TNAAANAAAN NACNGGAAAN TNCCNCCGGN AAANAAANCN NNCTTTTNAA
    AAAANNGGGG GGNNNCCCNG GAAAAAAANA ANAANANAAA ANCTNTNGGG
    GGAGGGGGNN AAANCCNNGG AANAAAAANG NCCCCCCNNN NNTGGNAAAA
    AANNNNGGCC CCCCCCNNNN TGGAAAANAA AANCCCCCCC NCNGGNGNCN
    NNAAAAAAAA NNCCNNNCNN NGGGNNTAAA NNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 54641 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -1192; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 2558; Region: intergenic
    Flanking Genome Sequence: 12-0909-1 - 3-prime edge
    CTTAAGCAAT ATAAAGGCAT GCATAGAGAT GGAAATAAAC ATGTGTAGAG 
    TTTGATGATC TAACATTAAT AAAGGATTCC ACCTGTTACA GAATCTTGAT
    GAACTTGAGT AGAGTTTGTT TATTGAAATA AATAGACTAA CTAAGAAAAT
    AAATGAAGTA CTTGTAAAGT GAGAGGTTGA GGAGCAGATA TGGTGGGCAA
    GCT

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR