1. Home
  2. Mutant Lines
  3. 12-0630-1

12-0630-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11110862 [Map]; Strand: c
      • AT4G20720.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: 2809; Region: intergenic
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 901; Region: intergenic
    Flanking Genome Sequence: 12-0630-1 - 3-prime edge 
    ATCGAATGTT ATCCCTGCTT CTATCCAGAA GATGCGATCT TTAGAACTAC 
    GAATCCGTCT GAATAATCCA GCTCACCACG GGGCCGATTT CCCGACAAAT 
    CACAGGGAAT CTCGTAAGGG TTAATACATC TACGGATCGC CCAGAGAGTC 
    GTCTTTTCGG AGAAGTTGAC CTCGCCTTAA TCGAAGATAT ATGCTGAGAG 
    ATATAAACGT TTACCTCAAG CAAGTGCAAC CAGTCATGAG ACCCAACTCT 
    ATAAAACCAG TCAGCTTCGG GATCGTTTTC CTTGAAAATC CTGATGAACT 
    AGGAGTGATA TACCTATCTA CAGATCGCCC CAAGAGTCAG CTTTCTAAAG 
    AAGCCGACCT CGCCTCGATC CGAGCTGTCT ATTAGGAGTT ATCATCACTT 
    CTCTGCACTA GACACAATTT CCCTGACAAA TCCGCAGCTG TCGGAACAGC 
    CAACTTACGA ATCAAACTCC AAGCGACCTA GAAAGAAACA AGATACAATC 
    TACGCGACAA CGGAAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 57633 [Map]; Strand: w
      • AT2G01034.1 - [+] show detail - transposable element gene
        Distance: -9283; Region: intergenic
      • AT2G01037.1 - [+] show detail - transposable element gene
        Distance: 1072; Region: intergenic
    Flanking Genome Sequence: 12-0630-1 - 5-prime edge 
    CATTCGATAG ACAGCTCCGA TGGAAGTGAG GTCAGCTTCT AGGGACACCT 
    GACTCGCTGG AAAATCCATA GATGTGCTAC TAGTTTCGAG AATCGTTGAG 
    ACTTGTGGGG GAATTGATCC CTAAGATGAC TAGTCTTCTT AAGAAAGGAT 
    TCTATGTCAA ACGAGATTGC ATCCTCTGCA GAAACATGGA GATAATTCTC 
    GGATGAGATA TCGGATCGAA GGCTAGTTAG ATTCCCTGGA AAGCTAACAA 
    CCGGGGCAAT CCGTGAACAT ATTATTCGAT GCAAGAGTCG TTGCGACATA 
    TCGGGAAATC GGTCCTGAGG TTGACTGGTC TATTCAGACG GATCTGTGTT 
    GAAACAGACA GCATCGGCTT TACAAATACG GTGATAACTC TCAGAATAGA 
    TATCCGATTG AACCATGGTT AGACTCCCTG GAAAGCTGAT CTCCGGGGAA 
    ATCCGGGAAC ACGTTACACG TCACACCCGG TTCATTGGAA CCTGACGGGA 
    AATCGCCGAG CAAATAAACG GATTGGATTA TCTTGGCTTG ATGAGCGTTC 
    ACCGAAAACT TGGATGAGTA ATATGCGAAN AGAGTTGTTT GTGTCCCCCT 
    ACCTGGCGCG CCNATTGTTG ATTCTGAAAA TCACACNATA AATTTGTTTA 
    AAGGGGGTAA ACATTTTACT TAACTCTCTN TCGCTNTTTA NNGACCAAGA 
    TCAATG

AT2G01034.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT2G01037.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 5.0e-229 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)
Link
InterPro Scan - TAIR

AT4G20720.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT1G05090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR