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12-0623-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2866439 [Map]; Strand: w
      • AT3G09330.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 0; Region: exon3 (CDS)
    2. Chromosome: 3; Position: 2869729 [Map]; Strand: w
      • AT3G09340.1 - [+] show detail - Transmembrane amino acid transporter family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-0623-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGAATTT 
    TCCCATCCTA CTTTCATCCT CTCAAGACAT CGTTTGAGGA GGATACCGGT 
    GTAGCAAGTG ATGATACCGA AGAAGAAGAG TATACAAAGC CCGATCCAAC 
    CTCCTTCTTT CACCGCGTAA GGCATTGTGA GTAGACCTAC TCCACATAGC 
    ACATTTATCC CTGCATCACG TAAATCCGTT AACCCTCAAG TGTTCTGGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2847106 [Map]; Strand: c
      • AT3G09260.1 - [+] show detail - Glycosyl hydrolase superfamily protein
        Distance: -3325; Region: intergenic
      • AT3G09270.1 - [+] show detail - glutathione S-transferase TAU 8
        Distance: 1183; Region: intergenic
    Flanking Genome Sequence: 12-0623-1 - 3-prime edge 
    ATCAGCTAAT TGGATAATTA GTCCTATTGC ATTATAATTC TTTTTTACTT 
    TTCTGACGAC CCTACATGGA CCTTTTTAAG ACCAATGAAG CAAGGTCGTG 
    ACACCTGGTT AGTGGTTAAT TATGATGTAA ATTAGTTTAG CTATGTGTGT 
    GGGTTACAAA GGAAATCTGA ATAAGGGACA TTTTTTTCCT TTTTTTTTAC 
    GGTTTANTTT AAACNCTACG TTTGTCAAAA AAAATTTATT TTTTTTNTNT 
    NAAANATN

AT3G09260.1

Model type
Protein coding
Short Description
Glycosyl hydrolase superfamily protein
Curator Summary
Encodes beta-glucosidase.The major constituent of ER bodies. One of the most abundant proteins in Arabidopsis seedlings. Exist in an soluble (inactive) and non-soluble (active) form, most probably formed in a polymerization process. Involved in the mutualistic interaction between Arabidopsis and the endophytic fungus Piriformospora indica.
Computational Description
PYK10; FUNCTIONS IN: beta-glucosidase activity, copper ion binding, hydrolase activity, hydrolyzing O-glycosyl compounds, fucosidase activity; INVOLVED IN: ER body organization, response to salt stress, response to symbiotic fungus, cellular response to cold, response to osmotic stress; LOCATED IN: peroxisome, nucleus, vacuole, membrane, ER body; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT1G66280.1); Has 11331 Blast hits to 11008 proteins in 1473 species: Archae - 140; Bacteria - 7847; Metazoa - 701; Fungi - 200; Plants - 1444; Viruses - 0; Other Eukaryotes - 999 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09270.1

Model type
Protein coding
Short Description
glutathione S-transferase TAU 8
Curator Summary
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
Computational Description
glutathione S-transferase TAU 8 (GSTU8); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase tau 7 (TAIR:AT2G29420.1); Has 7045 Blast hits to 7029 proteins in 1100 species: Archae - 0; Bacteria - 3564; Metazoa - 831; Fungi - 183; Plants - 2012; Viruses - 0; Other Eukaryotes - 455 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09330.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G09340.1); Has 5089 Blast hits to 5044 proteins in 316 species: Archae - 6; Bacteria - 118; Metazoa - 1819; Fungi - 983; Plants - 1434; Viruses - 7; Other Eukaryotes - 722 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09340.1

Model type
Protein coding
Short Description
Transmembrane amino acid transporter family protein
Computational Description
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G09330.1); Has 5037 Blast hits to 4989 proteins in 303 species: Archae - 8; Bacteria - 84; Metazoa - 1819; Fungi - 980; Plants - 1422; Viruses - 9; Other Eukaryotes - 715 (source: NCBI BLink).
Link
InterPro Scan - TAIR