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12-0606-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 280445 [Map]; Strand: w
      • AT4G00680.1 - [+] show detail - actin depolymerizing factor 8
        Distance: 0; Region: intron1 (CDS)
      • AT4G00690.1 - [+] show detail - UB-like protease 1B
        Distance: -868; Region: promoter
    Flanking Genome Sequence: 12-0606-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    TTCATGTATA TATTGACTTC ATTAAGAATG ATGTTGTGGA CATATGGTTT 
    ATATGCTATG ATCCTAAATC ACAATCTAAG TTTTATGGTA ACTGGTTAGG 
    AAGATGTATA GAATGGAAAA AGCT

AT4G00680.1

Model type
Protein coding
Short Description
actin depolymerizing factor 8
Computational Description
actin depolymerizing factor 8 (ADF8); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 11 (TAIR:AT1G01750.1); Has 1612 Blast hits to 1604 proteins in 270 species: Archae - 0; Bacteria - 5; Metazoa - 759; Fungi - 157; Plants - 515; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00690.1

Model type
Protein coding
Short Description
UB-like protease 1B
Computational Description
UB-like protease 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1373 Blast hits to 1372 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 267; Plants - 349; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).
Link
InterPro Scan - TAIR