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12-0588-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 86025 [Map]; Strand: w
      • AT2G01110.1 - [+] show detail - Sec-independent periplasmic protein translocase
        Distance: -796; Region: promoter
      • AT2G01120.1 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: intron4 (CDS)
      • AT2G01120.2 - [+] show detail - origin recognition complex subunit 4
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 12-0588-1 - 5-prime edge 
    ATANNAATAT ATGAGNNAGG GGAATTTTNN ATANNAGATG ACCCTTCACC 
    CCAAANGGNN AAGAAAANGG AGCNGAGNCC CNAGAACAAA AACGCCCCNC 
    CNGNGNCNNC NNNCACNCGA NCNNTAATNT TNANATCNTN CNATGGGNNN 
    NNACNTNCTT TCANAGACNG GGNNNTNNTT TTCCNNAANG AGGTATGACC 
    NTNCANCTCT ANTAANNNTC NNTNTCTTTG CTNCACACCC ANCTGTNTAA 
    NTNGACTTGC TTTCTCTCTT GCACTTCCAG GCATCATTCG ATGACAATTC 
    ACAATTCATT ATANCCATGT TGCGGNCAGT ATTTTTACCT TTACATAAAT 
    GAGCCTTTTT GATATTCAAC GCANACAAAC TGATANANAT ATTTCAGGGC 
    ATGNGGACTA NCACATAANA CTATCATCTT TGNGCTTGAT GAATTNNACA 
    TGTNNNCNCA NGCNANAATT ACCANNCCGG GCCNNNNACC NCNCNTNNC

AT2G01110.1

Model type
Protein coding
Short Description
Sec-independent periplasmic protein translocase
Curator Summary
mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.
Computational Description
ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.1

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527); Has 675 Blast hits to 668 proteins in 199 species: Archae - 9; Bacteria - 0; Metazoa - 335; Fungi - 166; Plants - 90; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01120.2

Model type
Protein coding
Short Description
origin recognition complex subunit 4
Curator Summary
Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.
Computational Description
origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527).
Link
InterPro Scan - TAIR