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12-0252-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22702101 [Map]; Strand: w
      • AT1G61665.1 - [+] show detail - pseudogene, similar to serine/threonine kinase, blastp match of 55% identity ...
        Distance: -355; Region: promoter
      • AT1G61540.1 - [+] show detail - Galactose oxidase/kelch repeat superfamily protein
        Distance: -397; Region: promoter
    Flanking Genome Sequence: 12-0252-1 - 5-prime edge 
    GATTATAGTA AACACTTAAT GTTTTTGAAC TGTATGTAGA TTGACCGATT 
    CAACCAGCTG GAAGCCAATT CGGCATTTAG GGGAAGCTGA CGCAAATTTC 
    CGGTAAGAAG ATCCGGTCTA AAATAGTGTT TCCGGTGATC AGGATTTGTC 
    ACTCCCGCTG ACAATAATAT CTGATAGCTT TTCATATTAA CCCCTAAAGA 
    ATGTTTGATA TCCGATATTA ATCCCAAATT TTGTTTCATA CTATTTTCAT 
    CCACCAGATT CAGATCCATA TAAAAAGTTT TGTGACTCAT TTACCTAATT 
    CAAAAAACGT TTTCCGTAAG GCCCATTTAC ATGCTAACTT TGGGCCTATA 
    TGCCTAGGTT TTGGTCGATT TTTGAAATCA AGGAAACCCT TATTATTCCT 
    TCCTTGATAA AGAAGAATCT TCGTTATTGC CCTATTGACG TCCAAAGCCA 
    GATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 20208 [Map]; Strand: c
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 142; Region: intergenic
      • AT4G00060.1 - [+] show detail - Nucleotidyltransferase family protein
        Distance: -1229; Region: intergenic
    Flanking Genome Sequence: 12-0252-1 - 3-prime edge 
    CTGAGGATAA GTGAAAAGTG GAAATGGAGT AGACACAATA GCATATGCTT 
    TGTCTGCAAA ATTCCACAAT AATTTGTTGA TAATGTTATT GAATTTATTT 
    ATAATGCTAC AAGAAACAAA AAGAAAGCGA ATGTTTATTT TTTAAAGGTG 
    CCTGTAAAAT GATTGGGTGT TAACAGGTCA ACTTGGCCCC GACCATTACC 
    ACACGTTTGT GAGTGAACAA GTCATATTAT TATTAATAAC GAAAAGTGAC 
    TCGAAAATTC ATGAGAAAAA TGCCAAACTC AACTACTCAA GTAAGTATAA 
    GTATACTGTT TACACTATAT AGTAATCAAT CGTCACCACA AATTAAGCCC 
    TATATTTGTC GTTTTACTAA TAAACGAACG TACAAATACA ATATATCACT 
    CAACTTTGAT TTAGTTTGAG ATGTTGTGTG TACTTAATTA CATAAATGAA 
    TTTGTGCATG CGACAAGTAT TTTCGGACAT ATCCATATAT ATACATTTTC 
    TTGCAATGTA TAATACGATA CNAANAGGGA GAAAATGACN TANNAGGAAA 
    AGAAATCAAA TCATNTAACT NCNNANGNNN AANNANNNCN GGGNCGNNNA 
    NNANNCNGNN NT

AT1G61540.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT4G39590.1); Has 1659 Blast hits to 1561 proteins in 111 species: Archae - 2; Bacteria - 82; Metazoa - 518; Fungi - 4; Plants - 1010; Viruses - 4; Other Eukaryotes - 39 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61665.1

Model type
Pseudogene
Computational Description
pseudogene, similar to serine/threonine kinase, blastp match of 55% identity and 3.4e-14 P-value to GP|2181190|emb|CAA73134.1||Y12531 serine/threonine kinase {Brassica oleracea}
Link
InterPro Scan - TAIR

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00060.1

Model type
Protein coding
Short Description
Nucleotidyltransferase family protein
Computational Description
maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR