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12-0151-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 221530 [Map]; Strand: c
      • AT5G01560.1 - [+] show detail - lectin receptor kinase a4.3
        Distance: -1000; Region: promoter
      • AT5G01570.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-0151-1 - 3-prime edge 
    CTGAGAGCTA TTCCATTCTC CTGCGACGAA GATTTTAAAG AGATACATGA 
    ATCTCTCCAA GGTTGAATGC CTTCTTAAAT TGGGTTGATG TGTGTTTGAT 
    TAAGTGGTGA ATTTAATTTT GTTGCGCAGA TTTGCAGAAG AAACTCGATG 
    TTTGCAAGGA GAAGACAGAT GAGGCAAATT CAGAGATTGC GGATGAAGAA 
    GAAATTGAGC GTCTTCAGAA AGAGCTTGAT GAAGAGCTAG AACTAGAGTG 
    CAAGCTGAAG GAGGAGCTTA GATACGTATT TCACTGAACT GAGCTTAAAC 
    ATCTCGTCCG TTGATTCAAT GTCATGACTA ATTTTGGTTT TTGTCGACAC 
    ATTCATAGCT GATGAACTCA AAGACCTGAA TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14201325 [Map]; Strand: c
    Flanking Genome Sequence: 12-0151-1 - 5-prime edge 
    GTGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGACCACCG 
    TCCTGCTGNC TTAATNGACC AACACCCTTT GTGGGTTCTA GGTTAGCCGC 
    GCAGTTGGGC ACCTGTAACC CGGCTTCCGG TTCATCCCGC ATCGNCAGTT 
    CTGCTTACCA AAAATGGCCC ACTTTGGAGC TCTCNATTCC GTGTGACGGC 
    TCAACAAAGC AGCCGACACA GTCCTACCTA TTTAAAGTTT GAGAATAGGT 
    CGAGGGCGTT GCGCCCCCAA TGCCTCTAAT CATTGGCTTT ACCCGATAGA 
    ACTCGCAGTC CGAGCTCCAG CTATCCTGAG GGAAACTTCG GAGGGAACCA 
    GCTACTAGAT GGTTCGATTA GTCTTTCGCC CCTATACCCA AGTNAGACAA 
    ACGATTTGCA CGTCANTATC GCTGCGGGCT TCCACCAGAG TTTCCTCTGG 
    CTTTACCCCG CTCAGGCNTA GTTNACCATC TTTCGGGTCC CGACAGGCAT 
    GCTCACACTC GAACCCTTCT GAGAAGATCA AGGTCGGTCG GCGGTGCACC 
    CGCGAGGGAT C

AT3G41979.1

Model type
Ribosomal RNA
Short Description
rRNA
Computational Description
5SrRNA
Link
InterPro Scan - TAIR

AT3G42047.1

Model type
Pseudogene
Curator Summary
unknown pseudogene
Link
InterPro Scan - TAIR

AT5G01560.1

Model type
Protein coding
Short Description
lectin receptor kinase a4.3
Curator Summary
Encodes LecRKA4.3, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination.
Computational Description
lectin receptor kinase a4.3 (LECRKA4.3); FUNCTIONS IN: kinase activity; INVOLVED IN: abscisic acid mediated signaling pathway, seed germination; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: lectin receptor kinase a4.1 (TAIR:AT5G01550.1); Has 124782 Blast hits to 123109 proteins in 4852 species: Archae - 131; Bacteria - 14218; Metazoa - 45637; Fungi - 10709; Plants - 35284; Viruses - 441; Other Eukaryotes - 18362 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01570.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G08880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR