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11-6553-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 103174 [Map]; Strand: w
      • AT4G00236.1 - [+] show detail - pseudogene, similar to leaf senescence-associated receptor-like protein kinas...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-6553-1 - 5-prime edge 
    NGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCACAAGAAC CTAACCGCTC TTATCGGATA 
    CTGCCACGAA GGCAAGAAGA TGGCGCTTAT CTATGAGTTT ATGGCTAATG 
    GAACCTTAGG AGATTACTTG TCAGGTCAGT CTATTTGCTA CTTTGTTTTG 
    GTCACTGGTC TTTTGCTGCT GTAGACATTG TTTTACAAAA TGAAGGTACC 
    ATTTGACCGC AAGAATTAAG CGAGAAAAGT GATGTTTAGA GCTTCGGGGT 
    TGTTCTTTTA GAGGTTGTCA CAGGCCAACC GGTGATTGCA CGTTCAAGAA 
    CAACAGCAGA GAACATACAC ATAACTGAGT CGACTTTAAT GCTGTCGACA 
    GGAGATATCA GAGGCATTGT GGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 269527 [Map]; Strand: w
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-6553-1 - 3-prime edge 
    TTTAAAANGG NAGAGGTATT TTTTCGACCG TTACCGACCG TTTTCATCCC 
    TNGATCANAG ATATTCGCGT NTATGTATTT ACGCAGACCT TTGCTACACA 
    TCAACTCACA CATACGTCCC CCCTCCGGTT TATTCGACGT CTCCGGTACA 
    ATCTCCTGAG ACGGTTGGCT CACAGTGACG GTGGTTTCTA CAGATACATT 
    GTTCCGCGGA GGCGATAACA TCGGCTGATG GAAATTATTG TTCCGCGCGG 
    CGAGGACAAC GCCGTTACTC TCGAGTTTGG AATCAATTGC GTTTTCGATT 
    GACTCGATGT GCTTCTGAAT ATCATCGAAT TGGCGTTTGA ATGTTTCCAC 
    TGCAACTGAA AACGCAGCTA ATTCGTCTAT GGATTTCAAA AATTGAGGCT 
    GCTTANATTG ACCGATCGTA ATGNCCATAC TTGTAGACTC TGGCTTCGAC 
    ANTCTTCGGG NATTCNTCTT NNGTCACTGT NCNGATNGNN GTNAACTTGT 
    ANANTAANGT CCATCCTTGC ANACTCTGTA NTNGATTAAT GAAAACATAG 
    CTAGNTTGCA TGATCACNAC ATGTNATATA NNGGGTGNAA ATAGTCACNT 
    NANGCNGTGG NNTTATAACA NGNNNGTNNN AAAANNAACC GGTNCTNTGN 
    TCGGTANNNT NTTANCNCNA ANGTNNGCNT GTCGTGNNNG TACATTNCNA 
    CTNATCGGNG GCNNNGGNTT CGGCNAGNTN TNTCAGNNCN NCCNCCACCN 
    ATNGATCGCC NNNNCNNAAN AG

AT4G00236.1

Model type
Pseudogene
Computational Description
pseudogene, similar to leaf senescence-associated receptor-like protein kinase, blastp match of 56% identity and 4.7e-52 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}
Link
InterPro Scan - TAIR

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR