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11-6207-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84461 [Map]; Strand: c
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 11-6207-1 - 5-prime edge 
    CTGAGGAACG TTGACTGTTG ACTGATAGAG CAACTTCAGT GTGTTGAGAC 
    CAAACATAAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 84577 [Map]; Strand: c
      • AT4G00200.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-6207-1 - 3-prime edge 
    TTCCTCAGCC GAGAATTGAA CTAAACACAA GAACAGATTT CTCCTGGTCA 
    GCTCACGCCG GAGAAGTTCT CAACGGTATT TTCCGGGAAA AAATCAGATT 
    TATATGATCC AAACAAGAAG AAGAAAAAAA AACATAGTGT CCCCAGTTGA 
    AAACAGAGTA GAAAGAAAAC AAAAAACCAG ATCGTAAAAA AAAAAAAAAN 
    NNNNNNAAAA ATTTGGGTTT TNGNAAAAAA AANTTNCCAA AAANANTTTT 
    TTTTTTTTTT NGGNGNAAAA AAAAAANCCC NCGGGNANTT NGGGNNAAAA 
    AAAANTTNCC CNCCNGGNTT NNTTTAAAAA AAAAAAAAAA AANTTNCCCC 
    CNNNGGGNNN NTTTTTTTTT NNNNANNNNN TTTTTTTTTN AAAAANAAAA 
    AANNNTTTTT TTTNNNNNAA NTTTTTTTTN NNGGNNCCCN NNAAAATTTT 
    NNNNNNNGGN NNNGGGGNCC CCNNAAAANN NAANGGGGNN NGGGGGGNNN 
    NNAAANNCCN NGGGGGGGNN NCCNTTNNNN CNTNNGGGNN TTTTTTNAAN 
    NNCCCNNNCN TTTTTTTTTT TTNNGGGNNC CNTTTNNAAA AAAAAAAAAA 
    NNNNNGGGGG NNNNAAAANN NGGGGGGGGA AAAAAAAANT TTNCCC

AT4G00200.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR