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11-6124-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33262 [Map]; Strand: w
      • AT4G00080.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -538; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -829; Region: promoter
    Flanking Genome Sequence: 11-6124-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAT GTTCACGACT GCTTGGACCA AATAAGAGAC 
    AGCGTGAACC AGTTGAGTCT AGCCATAGCG GAGCTAGACA GAGTCAGCAG 
    GAGACAGGGA AAGAGCCAAG GGGATCTACA CTGGCATATA AATAACCTGC 
    AGACGTGGAC AAGCACAGCT CTTACAGACG CCGAGACTTG CGTGAGCCAG 
    TTCCCGGGAC GTAGGATGAG CAAACTTAAG GCTACGATTA AAGGAAAAGT 
    GAAGAATGTG GAGGAAACAA CTAGTAATGC CCTTGCCTTC ATCGAGCACT 
    ACGCTGCTGC TAGGTACCGA GCCAGACGTC CTTAAGCTGA GCCTGTGTGT 
    GTGTTTTGAT CATTTTGCCT TAAATTTCTT CTTACTTCTT GATATTTGTG 
    TGTGTAATTG TTAACCAGTC GTGTAAATCC AAAAGTTCAT ATATGACCGT 
    AAATTGATAT AATTCAATAA CAAGGAAAGT TCTAAGCCTA AAACAAGCAA 
    GAAAATACCT TTGCCGTATA CAAAGATTAT TAACATTATT ATCGACATCA 
    CAGAATGTAG CCCGTCTAGC TCAGTTGGTA GAGCGCAAGG CTCTTAACCT 
    TGTGGTCGTG GGTTCGAGCC CCACGGTGGG CGATAGNGTT TTTTCTGTTG 
    NTTTTGTAAA GAGCTGAANT TNTAATGGGC TTTGAAATTA NTGGGTTCN

AT4G00080.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
unfertilized embryo sac 11 (UNE11); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 574 Blast hits to 571 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 574; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR