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11-5888-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33758 [Map]; Strand: c
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: -42; Region: promoter
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -333; Region: promoter
    Flanking Genome Sequence: 11-5888-1 - 3-prime edge 
    AATAACAAGG AAAGTTCTAA GCCTAAAACA AGCAAGAAAA TACCTTTGCC 
    GTATACAAAG ATTATTAGCA TTATTATCGA CATCACAGAA TGTAGCCCGT 
    CTAGCTCAGT TGGTAGAGCG CAAGGCTCTT AACCTTGTGG TCGTGGGTTC 
    GAGCCCCACG GTGGGCGATA GTGTTTTTTC TGTTGTTTTT GTAAAGAGCT 
    GAAGTTATAA ATGGGCTTTG AAATTAATGG GTTCGAACAC CAACGGTGGG 
    CCTTTTTTTC TTTCTATTTT TGTAAAGAGC TGAATTTTAA AATGGGCTTT 
    GAAATTAATG GATCAGTGAG GTTAAGGCCC ATATTTCTAA TAAAATTAGA 
    AGTAGTTACA AACCCGACCC GACCCGGTTA CGTGTATGCG GAGATCACTC 
    TCCTCTCCAT AAGCTAAGCT CTAGAAACAC CGCCTTTAAC GTCTCGCTGC 
    ACCATTTTTC ATCGTTGATC AGTCGTCGAT CCTCTTGAGT GATTTGATTT 
    TANACTTTCT AGTTATCAAA CTCGAAAGAT GGATTCTGTC CTTGTAGTGG 
    GCATTGCATC GGTTATTCTC GGTGCGTTGA TCGCTGTACT CTTCTTCGGT 
    AGCTACTTCC GGAAGCGGAC ATCGGAGGTG CAATCCATGG CCAAAGCGGA 
    GCCTCAGGAT C

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR