1. Home
  2. Mutant Lines
  3. 11-5615-1

11-5615-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4792403 [Map]; Strand: c
      • AT5G14820.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 3; Position: 23133845 [Map]; Strand: c
      • AT3G62540.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5615-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAT GAGATGGGGA GAGCAGTTTG GGACGAGATG 
    ATCAAGAAAG GGATTTGTCC TGACGATAAC TCCTACACGG TTTTGATCAG 
    AGGGCTTATA AGTGAAGGGA AGTCGAGAGA GGCATGCAGA TACNTTGGAG 
    GAGATGCNTT GACAAAGGAA TGAAAACCCC TTTGATTGAT TATAACAAGT 
    TTGCAGCTGA TTTCCACAGA GGGGGACAAC CGGAGATATT TGAGGAATTG 
    GCACAGAGAG CTAAGTTCTC AGGTAAGTTT GCTGCAGCAG AGATCTTTGC 
    GAGATGGGCT CAGATGACTA GAAGGAGATG CAAACAGAGA TTCATGGAAG 
    ATTGATAACT TGGGGGCGGG TAACTGGATC ATTCAACTCA CTCACTCGGA 
    GAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22762030 [Map]; Strand: w
      • AT3G61500.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT3G61500.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-5615-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    TGGCATTGTT TGCTTAAAGT TCCTTAGGCA TAAATTAGAA ATGAAATCTG 
    AGGATCTATG CACTGAGATT TGTTCCGCAC TTGATAGTTG GAGGGAAAAT 
    ATCACCGCGG AAATATCGAA ATGCCGCGAA GTTCTTGGGA GATATGTTGA 
    ATCATTAAAC TTTCATAAAG TCAAGAATTG TATAAAAGAA GCAAAGGTTC 
    TTATGAAGGC ATTTTATGGG GCTAATGTTC TTACGGCTTA TATCTGCAGT 
    GTCTTTGTGA TAGTTTTGTC GAATT

AT3G61500.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 90 Blast hits to 90 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G61500.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46080.1); Has 90 Blast hits to 90 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62540.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G14820.1); Has 36772 Blast hits to 11783 proteins in 282 species: Archae - 3; Bacteria - 24; Metazoa - 449; Fungi - 549; Plants - 34543; Viruses - 0; Other Eukaryotes - 1204 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14820.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G62540.1); Has 37965 Blast hits to 11999 proteins in 283 species: Archae - 3; Bacteria - 24; Metazoa - 443; Fungi - 549; Plants - 35727; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink).
Link
InterPro Scan - TAIR