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11-5563-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 110226 [Map]; Strand: c
      • AT2G01180.2 - [+] show detail - phosphatidic acid phosphatase 1
        Distance: -1615; Region: intergenic
      • AT2G01190.1 - [+] show detail - Octicosapeptide/Phox/Bem1p family protein
        Distance: -4749; Region: intergenic
    Flanking Genome Sequence: 11-5563-1 - 3-prime edge 
    ATGTCCATCA CGGTCTCCAA AAAAAGTTAC CAAGAACCTT AAAGTAAAAA 
    CGAATTAATA TTAATTAAAT TTTAAAATGA TTTAAATATT TTATTGCTGA 
    GCTGTTGTTT GTTTGCTTAC TCTTTTAGGT TTCCTTGTTT CACTTTTGCA 
    TTTCTTGAAA CATCATTTAG TTTTTTTTTT TTTTTTTNCC CNAAACCCCC 
    CCNCAAAAAA ANAAAANNNG GGGNAAANGG NCCCCCNAAC NGGGNTCCCC 
    CCNAAAAAAA CNGNANCCCN AAANNCCCCC CCCCANNNNN NNCCCCCTTT 
    TNNANNAAAA AANCCCNCCC CNGGGGGGNN GNNNGNNNNC CCCTTNNGNC 
    CCNNTTTTTN NCCCNTTNAA ANGGGNANNC CCCCCCGGGN CCGNNNCCCC 
    CCGGGNCCCN TAAAAA

AT2G01180.2

Model type
Protein coding
Short Description
phosphatidic acid phosphatase 1
Curator Summary
Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves.
Computational Description
phosphatidic acid phosphatase 1 (PAP1); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: phospholipid metabolic process, response to stress; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidic acid phosphatase/chloroperoxidase, N-terminal (InterPro:IPR016118), Phosphatidic acid phosphatase type 2/haloperoxidase (InterPro:IPR000326); BEST Arabidopsis thaliana protein match is: lipid phosphate phosphatase 3 (TAIR:AT3G02600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01190.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
Link
InterPro Scan - TAIR