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11-5508-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 101380 [Map]; Strand: c
      • AT4G00232.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: -659; Region: promoter
      • AT4G00234.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel prot...
        Distance: 0; Region: exon1 (CDS)
      • AT4G00236.1 - [+] show detail - pseudogene, similar to leaf senescence-associated receptor-like protein kinas...
        Distance: -761; Region: promoter
    2. Chromosome: 4; Position: 124683 [Map]; Strand: w
      • AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-5508-1 - 5-prime edge 
    GCTAGAGAGA CTCACATTTG TGCAAAAGCA ATGAAGGTCA CCAAGTAACG 
    AGCAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 124567 [Map]; Strand: w
      • AT4G00290.1 - [+] show detail - Mechanosensitive ion channel protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-5508-1 - 3-prime edge 
    TCTCTAGCTT TATTCCTTTG ACATGTATGT TGTAGAAAAT AGATAGACTT 
    GATGAATGTG ATATGCTGCA GTGCTGCAAT GGTGGCGCCA ACAACTATAG 
    CAGCTCAATA CTTTTCCCCG ACAGTGAAGG GAGCNGGTTA TTCTCTCACT 
    TGTGTGGTTC CTATATCGGT GGAAGACCAA TGTGATTACC CGAATGTTGT 
    CGGCTAAGAG TTTTGGTGGG CTTGATAGGG ACAAGGTATT GACTTTAGAC 
    AAAGTATCAT CTGTTGGTCT TTTCGCTATC GGTTTGATGG CTTCTGCTGA 
    AGCATGTGGT GTAGCTGTTC AATCTATCTT GACAGTTGGT GAGTAACCTA 
    GAACTCAACA ATGTGAGATA TTAGCTTATT ATGATTTGAG AGAGAATGAC 
    TACTTCTTGT TATATATAGA ATT

AT4G00232.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT5G41765.1); Has 109 Blast hits to 109 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00234.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Mechanosensitive ion channel protein (TAIR:AT4G00290.1); Has 57 Blast hits to 57 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00236.1

Model type
Pseudogene
Computational Description
pseudogene, similar to leaf senescence-associated receptor-like protein kinase, blastp match of 56% identity and 4.7e-52 P-value to GP|9837280|gb|AAG00510.1||AF285172 leaf senescence-associated receptor-like protein kinase {Phaseolus vulgaris}
Link
InterPro Scan - TAIR

AT4G00290.1

Model type
Protein coding
Short Description
Mechanosensitive ion channel protein
Computational Description
Mechanosensitive ion channel protein; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, membrane, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Mechanosensitive ion channel MscS, transmembrane-2 (InterPro:IPR011014), Mechanosensitive ion channel MscS (InterPro:IPR006685), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00234.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR