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11-5136-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1690666 [Map]; Strand: c
      • AT1G05650.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-5136-1 - 5-prime edge 
    GATAAAGTCA TGGGCGAGGC CGAGTACCGG ATTCGTTAGA AACGTCTTCT 
    TCCAAAATCT AATCATGAGG AACGTCCAAA ACCCTATCAT AATCGACCAA 
    AACTATTGTC CGTCCAAACA AGGTTGCCCT ACTGAGGTAT ATCCATATCA 
    TATTTTTGAT CAATTTAAGA CTAATCAAAT ATGCTATATT AACTTAGTCA 
    AATAATTAAA GATTTATTAT CTTTTATGTA TGTGTTAGCA TTCGGGGGTG 
    AAGATAAGCC AAGTGACGTA CAAGAACATA CAAGGAACTT CGGCGACGCA 
    GGAAGCAATG AAGCTGGTGT GTAGCAAGAG CAATCCATGC ACGGGAATCA 
    CATTACAAGA CATAAAGCT

AT1G05650.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05660.1); Has 4025 Blast hits to 4009 proteins in 482 species: Archae - 4; Bacteria - 1133; Metazoa - 14; Fungi - 1282; Plants - 1474; Viruses - 2; Other Eukaryotes - 116 (source: NCBI BLink).
Link
InterPro Scan - TAIR