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11-4613-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1228641 [Map]; Strand: w
      • AT5G04360.1 - [+] show detail - limit dextrinase
        Distance: 0; Region: exon29 (3UTR)
    Flanking Genome Sequence: 11-4613-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    GGACATATCT TAAATGTGAA ACACGCCGAG AGTTGTTGCA GTAAACAATT 
    CCTCATTCGA GCTTAGTCAA TCTGACAATC TTTATAGAGA TACATATAAT 
    GAAGTTAAAA CTAATAAGAT GATAGTGAGC CAAAATTATA TAGAAAATAT 
    TAAATTTCGA GGCATTATAT TAAAGACAAG CCATGTTCTT GAGAGAATAT 
    TATGGAACAG AACATTTACC TGTTATTGCT ATAAAGGATA AATTTCAACC 
    ATTCCGCGAT TCAACAAACA CCGTCGTTGT TCTTGCCGGT ACAGTGAAGC 
    CCCCAGAAAA CGAGTCGTAA ACTGATTTCT TGACTATTTC ATCGGCTGAC 
    ATCACCTGTT AGTCACTCAG AGTTAACTTA TCGCTTAGAG ATCTTACAAC 
    TTTTCTAATA CACAACAAAC TGAAAGGTGA AAGCT

AT5G04360.1

Model type
Protein coding
Short Description
limit dextrinase
Curator Summary
Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.
Computational Description
limit dextrinase (LDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 6260 Blast hits to 6253 proteins in 1613 species: Archae - 73; Bacteria - 5462; Metazoa - 45; Fungi - 1; Plants - 262; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink).
Link
InterPro Scan - TAIR