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11-4480-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271426 [Map]; Strand: c
      • AT4G00650.1 - [+] show detail - FRIGIDA-like protein
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 11-4480-1 - 5-prime edge 
    CGGTTGACTA AAACCTCTGA AGCAATAACA TTAGCATCTT AAATGTCAAT 
    TACAGGAGCA AAAAAATTTG CATTCTTAAG CCCCAAACAT TAAATTAAAT 
    TTTGAGACTG TTGGGAGTTA AATAAATGAC TAACTTAAGC AAAAACAAAA 
    AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 271548 [Map]; Strand: c
      • AT4G00651.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-4480-1 - 3-prime edge 
    CTCAGATACA TCGATATCAC TATCTAAATA GACCTCTGGC TCTTGGTCAT 
    CTGGATTCTC TTCATCTTCT GTCTCTGTTC CTTCTTGTTC TCGTTGCACT 
    GCTCGAGCAA TTGCGGATTC CAACCTTGTG CTTACAGTTT CCCATGACAC 
    AAGCT

AT4G00650.1

Model type
Protein coding
Short Description
FRIGIDA-like protein
Curator Summary
Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI.
Computational Description
FRIGIDA (FRI); CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: FRIGIDA-like protein (TAIR:AT5G48385.1); Has 841 Blast hits to 841 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 841; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00651.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 34 Blast hits to 34 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR