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11-4267-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11133644 [Map]; Strand: c
      • AT4G20770.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -558; Region: promoter
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-4267-1 - 5-prime edge 
    NTNNCNGCGC TNANCTCTCN NATNTCANAT CCACCGNTGG NATNATACAT 
    NCANCACTGG TAACNNGCGG NCTCAATNTC GATGATTNCT CTTCTCTTCA 
    CAAAACACTC GACGATTCTT TCTTCGGTGG AGCGTTGTGG AGGAGGAGAA 
    AACGAAGATG ATCCTTCTTC CGCAGCTGAA AATGAATCGG ATCTCGCCGA 
    GGCGTTTAAG GTGTTTGATG AGAACGGTGA TGGATTCATC TCCGCTAGAG 
    AACTGCAAAC TGTTCTGAAG AAACTTGGTT TACCTGAAGG TGGAGAAATG 
    GAGAGAGTGG AGAAGATGAT CGTTTCCGTT GACCGGAATC AANATGGTCG 
    CGTTGACTTT TTTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11106426 [Map]; Strand: w
      • AT4G20720.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: 0; Region: exon2 (CDS)
    2. Chromosome: 1; Position: 1464219 [Map]; Strand: w
      • AT1G05090.1 - [+] show detail - dentin sialophosphoprotein-related
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 11-4267-1 - 3-prime edge 
    NCCNTGCNCC NGNNCGACCT CGATTGGCTC CTATNTCTNC NNNCNNTTTN 
    NANGAACGGG ACGTCNAANA CNGNATNNCT CCTNTCNGGN NCNAACTGGG 
    GGGGCTATNC TCTNNANNNN AGTTCGAAGC ATNGGTNNNC TAAAANAACC 
    NCTAGNNTCC CTGNCCNGCG AANGAACCAN NTNNNNTGCG CATCTCGTCC 
    AGCAAACAAA CTAAGATTCT CATGTTCCCC AGAAGAAACA ACACTCTTAG 
    GTGCATCTTT TTTATCAAAC AAACCAACAT TATCATGCTG TTGCGATCCA 
    ACAACTCCCT GACTCTTTAC ACTATCGAAT AAGCTAAGAC TACGTGGATC

AT1G05090.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2; Bacteria - 2631; Metazoa - 338; Fungi - 185; Plants - 102; Viruses - 1; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20720.1

Model type
Protein coding
Short Description
dentin sialophosphoprotein-related
Computational Description
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT1G05090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20770.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02330.1); Has 56027 Blast hits to 13813 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 154; Fungi - 170; Plants - 55018; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20780.1

Model type
Protein coding
Short Description
calmodulin like 42
Curator Summary
Calcium sensor involved in trichome branching.
Computational Description
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR