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11-3948-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18568 [Map]; Strand: w
      • AT4G00050.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 11-3948-1 - 5-prime edge 
    GCCACAGCCG CCCACAGGCA AGTCATCATA TATATTAACT TGTTCTAGTT 
    ATTGATGTCT CTAGCTTTAT AAGTAAATGA TAATAATTAA GGAAAAACGA 
    TAGATGGAGG ACGAAGAAGA GAAGAAAGCC GGAGGGAAAT CATCAGTTTC 
    AACCAAGAGA AGCAGAGCTG CTGCTATTCA TAACCAATCC GAACGTGTAA 
    TGATTCACTC AACCATTATT TTATTTTTCA AAAAAAGTTT TATGTTATTC 
    GTCTACTGTT ACACATGCAT GACCCCCTGC GTTTTATCCT TGGTTGATTT 
    TATTACAGAA GAGGAGAGAT AAAATCAATC AAAGGATGAA GACTTTGCAA 
    AAACTGGTTC CCAATTCCAG CAAGGTACGC AAGTCGTTTT ACATAAACTA 
    GTGTACGTGG CTAAATAAAA GTCATATGCG TACGTATAGT AAAAAAATAG 
    ATGCTAGCTA GGTATACATG AAAATAGAGG GGATAATATG AAAAAGGGTG 
    GTGGACCAAA GTGAAGTGAA TGCATCTAAA GAAATGGACC TCATACGATG 
    ATTCTACTCC ACACACTTAT GTTCATCAAT CTCTTATTTT GCTTGTCCCC 
    TAAAAACTTA TTTTACATCA CTTTATTACT TGGTCCGGTT GGTCCATTCA 
    TATACACCTT TAATTATTAT ATGCCTTGGG NCTGTCGACT CAAAAATTCA 
    ACACAATCTA CAT

AT4G00050.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR