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11-3539-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8277759 [Map]; Strand: w
      • AT5G24313.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -357; Region: promoter
      • AT5G24314.2 - [+] show detail - plastid transcriptionally active7
        Distance: 0; Region: exon1 (CDS)
      • AT5G24314.1 - [+] show detail - plastid transcriptionally active7
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3539-1 - 5-prime edge
    TTTAAAAAAA NCAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCCTTN CCTGTANATN GTCCATCTTC AATTTTACCN
    NAAAAAAATC NTACNTTTGC CTTCTCTCAT AAGTCNTCCT TNGATGGNCG
    ATGNGACCTC TCATTTNCGA TTATNGTATA TTCAGATNAT NGATACNAGA
    AGTGGGAATT TGCTGATGCA CATATCANTC TCAGGTTNNG AATGGNTGAT
    ATCTATACTA ATTTGNGGGN TTTTANGAAG AGTNTCGAGG GANTGTGGAT
    GATTCTTTCA NGNNTATTGT GGGATTCAAA CANATGATAA TGGACGCCGG
    GTNNGGCGGA NGANAACATT GGNAAGTACT AAACTCGAGA TNCTGTTCAT
    TTNCTANTNC CATGTTATGA CCTANGNCCG AATCANGANT CAAAATNANG
    GNTCTGNTNA GCTTCTGNGA CAGATNTTTC NAAAAAGCTG CCCTNNCCAC
    TTNGACNNTC NCNNNAAAAT CTCGCTACTT GATTCCAGAT TNGCTTTANC
    ACACTGAGGA TCANGTGTCT GACNTNGNAA TNAGACNCAT TNCCGGNGAT
    ACTNGCANAC AANCTTTGGA AAANTNAANN CGGATTTTNG NNACCNCNNG
    NTNAGNNNNN GACNNNGGAA TAGNAATNCG NCNCGNNAAT NNTCNGNNAA
    AANNNAGATT GNCCTTNTTG NGAANCCNNA GNGNNGNNNN GNGNCCATAT
    NAGTNAATNG NTGNNGNGTT CCNNNNTGAG ANTNNNAANA CAAAAGNGGN
    NNNAGATAAN ACAANCNACA AT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8277705 [Map]; Strand: w
      • AT5G24313.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -303; Region: promoter
      • AT5G24314.2 - [+] show detail - plastid transcriptionally active7
        Distance: 0; Region: exon1 (5UTR)
      • AT5G24314.1 - [+] show detail - plastid transcriptionally active7
        Distance: -35; Region: promoter
    Flanking Genome Sequence: 11-3539-1 - 3-prime edge
    CAAGCCATTG ATACACAGTA AATAGATAGA ACCGAAATCT ATTTTATATG 
    TAAGCTTCTC CGGTTCGGTT TAATGGTTTA TCTTCGGTCG TGTTCTTATT
    TGGACAAATC ATCTCTAACC TAACCGGACA TTAATCTTTT TCTCTCTATT
    CATTTTTTCC GATAAAATAA TTCAACTTGC ACACAAGAAA AAAATTCTGA
    AACAAATCAA AACCAATACC AAAATCTAAA ATCATATAAT ACACACAAAA
    AATATTTTTC AGAAATCAAT CAATCTAATA ATAGTTAGTG GGAACCCTCT
    ATTGTGACTT TGTGAGCTAT GTATATACAT AAGACATTAC AAGATGGAAC
    CTCAACATAG TTGATAAGCA AAGAAAATAA CTCTATCGAT CACCGGATAA
    GAAAATGGTT TCTAGGAATC ATCTCTTAAT ATGTTGTGTT CTCTTAGCTA
    TGATCATGAT CGGGCATGCT CAAACCAACA GGAAACTTCT TGACGATAAT
    GTACCATCCT CTTATTTTCC ATCGATGGAG TCTCGTCAGG TTTTTCTTCC
    TTCTTCTCAT CGTTCACTTG TTGCTGAGCA TTACGACAGA TCACCACCTC
    CACCACCACC CAAAAGATCA GAAGTTGAAC CCCAAACTGA TGGTGTCTAG
    ACCATTGAGT GATGGTGAGA ATCGGTCCTG ATGAAAAGAC TCGTGAGTTG
    GTACCATGTT TTGAAAGAGC ATACATATGT TTT

AT5G24313.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24314.1

Model type
Protein coding
Short Description
plastid transcriptionally active7
Computational Description
plastid transcriptionally active7 (PTAC7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plastid chromosome, nucleoid; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G24314.2

Model type
Protein coding
Short Description
plastid transcriptionally active7
Computational Description
plastid transcriptionally active7 (PTAC7).
Link
InterPro Scan - TAIR