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11-3406-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 56098 [Map]; Strand: c
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2649; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 1101; Region: intergenic
    Flanking Genome Sequence: 11-3406-1 - 5-prime edge 
    ATGGTAACCG TTTGATGAGC GCAGTAAGTA GAAACATTGA CCGGTCCAGG 
    CGAGGTCTAG CAAATACTAT TAGAATTAAA ATTGATGTAA TCAATCACTG 
    ATAAATACTA TTAGAACTAC TCTACNTTTA CACTCACNGT ATTCCATCAT 
    TTAATATACA TACNGTGAGT GTAAAGTATT TCTTCACAAT TTATTTTTGA 
    AAATAGCTTT TAACCCATAG CAAATGCCTA TGTTGCCATG GGGTAGACGG 
    GACTGATCAC ACATCGAAGC ATACTCTTGA TAATATATGG ACAGGGAAAT 
    ACATATTAGA AAGCTATCAA ACTTTCTCTT CCTTTTTTTT TNGTTGGCNG 
    GGTTNNATNT TTNACTATNT GGNNNGGGGN ACANGTCNTT AAAAAANNAA 
    TAACANCNGG CTNTNNATGG CTTTTTTNTN TTCNTNGCTT NCAAAANGTA 
    AANNGANGAT AAAATCCCCA NCTTTGGGGG TNNTTNGCCC TTNANCTAAT 
    GGAGTNATNA TTTTTNTTTN ACNCCTTTNA AACNCCGCNT NTGTNCTTTN 
    GTNTNAAAAA AAACTNTCNT AGGAGTTAGG AAAATTTTNA TTTTGTTNTA 
    ATCAAACTTT AACTCACATT NGTTTTCCAT NATCCCACTG TTTTNNAAGT 
    NTTTTATTAT TAGTTGTNAA AAACTTTTAC GNCCAAAATT TAATCNCTAC 
    NANTTTTGCA ATGTGGATT

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR