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11-2917-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23417951 [Map]; Strand: w
      • AT5G57790.2 - [+] show detail - unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; B...
        Distance: -4327; Region: intergenic
      • AT5G57800.1 - [+] show detail - Fatty acid hydroxylase superfamily
        Distance: -2258; Region: intergenic
    Flanking Genome Sequence: 11-2917-1 - 3-prime edge 
    TTTAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    CGAAAGAACA TATTTGAACG TGCTTAGTTT TAACTTTTAA CCTTTTTTGT 
    AATTATAGGT TTTTTCTTTA AAACCCAAAT TACAGAAAGA ACCAAAAAAA 
    AAGGTATANA AACCCCAATG AAAGAAAACA TNTGGTATAT TTCAAGATAT 
    GGGTGAAAGT GATCANAGAT ACGGAGAATC GGGCCGACTC TAAANTAANN 
    NGATNTNNCT TNACTANATT TCACAGCCAN ACTCCAANCN GANCGGTGGA 
    NANAAAANAT NCNCTNNAGA GAGNTNCNTN NNTNNTNTNT NATCTTNTTA 
    TCTTGGNATA ATNTNCCTNN NNANTNNATN NATNTTNNAA AAANNGTNNN 
    NNCACNGGNN AACCNNNAAA ANNNNATNTN AATNTNNCTT AANNNNNATA 
    TNNAGATATN CNNNNAGNAT NNNAGATNNN NNGNTAAACN ANNATATATT 
    TNCNTATAAT NNANNNNGNC TTNGTNAGCT AATNNATCAT TNNATNTTCT 
    NTTATTNANA TNAGNNATTN AGGGATATNN ANNNNNT

AT5G57790.2

Model type
Protein coding
Computational Description
unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57800.1

Model type
Protein coding
Short Description
Fatty acid hydroxylase superfamily
Curator Summary
encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis.
Computational Description
ECERIFERUM 3 (CER3); FUNCTIONS IN: oxidoreductase activity, binding, iron ion binding, catalytic activity; INVOLVED IN: cuticle hydrocarbon biosynthetic process, response to salt stress, pollen sperm cell differentiation, wax biosynthetic process, cuticle development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02205.2); Has 879 Blast hits to 877 proteins in 232 species: Archae - 0; Bacteria - 279; Metazoa - 24; Fungi - 149; Plants - 340; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink).
Link
InterPro Scan - TAIR