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11-2681-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23186453 [Map]; Strand: w
    Flanking Genome Sequence: 11-2681-1 - 5-prime edge 
    GCGGCGAGTG ATCGGAGGTG AGCACTGATA CGGCGGCGAA TACGGCGGTT 
    TTGACGGCGG AATAACCATC TAGCGTAGCT GTGGAAACAG AGGATTAAAA 
    TGACGGCGAC GAAGAGGATG ATGACNGGAA GCAAGCATGA TTTTGCCGTT 
    TAGAGAGTAA CGTGACGATC CATGGTTCAT GTTTCCCCAT AAAGTCTTGC 
    TACTGTCAAA CAGGTTTCCC ATTGTTTTGA AGATAGATAG AGAAAGTGAA 
    GGTTTTAGAG AGAGAATGAA GTGAGTGGGT GAAACGATGA AGAAGAAGCA 
    AACGAGAGAG AGAGTGGGAA GTTTCTAATG TGGTATAATT CTGTGGGTTT 
    GAATCTCTTT ATTTATAGAC AAATACTATA TGAATTATTG GCTTCTCTTT 
    ATTTTATTTA TTTTCATCTT CTTTCTATTT GNTTTTATTG TTGATTGTTA 
    ACGTTTATAC NANTTTTATA TATTGCTAGC TTAGAGGGAA AAATTATCAC 
    AAANAAAATN TAATATTTTC AAAAGTGATT AAAGCTCCAN NCCGGGCCGN 
    NNACCACNCC GGCCCTNTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23186380 [Map]; Strand: w
    Flanking Genome Sequence: 11-2681-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    CCGCTAGAGA CCCCACCCAA TCATCATCCT CCCTCTCTCC TCTTGATCCG 
    ACGGTGCTCG AGAAGATCCC TATCTTCGTC TACTCCGTTA AAACCCATGA 
    ATCTCCGCTT GAGGAATGCT CTGTTTGCTT GTCGGAATT

AT3G62690.1

Model type
Protein coding
Short Description
AtL5
Curator Summary
Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end.
Computational Description
AtL5 (ATL5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein complex assembly; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G47560.1); Has 10661 Blast hits to 10636 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2642; Fungi - 1094; Plants - 5229; Viruses - 125; Other Eukaryotes - 1571 (source: NCBI BLink).
Link
InterPro Scan - TAIR