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11-2636-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 199639 [Map]; Strand: w
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 1060; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -2777; Region: intergenic
    Flanking Genome Sequence: 11-2636-1 - 5-prime edge 
    CGGGTGATNG GGGGTNGGGT ANACNCTNNG GATCACCAAC CCNGGCCNCA 
    TNCTCACTNN CNGGAANATT AGGCNAAGGT CTNTNTGCTA CATGAGGGTG 
    TCAACCGACC CTATCAAGTG ACACTACATA TCAAGGTGAA AATATATTAC 
    AACCGTCCAA AATATTACAT ATTTGGAGAT TTAGTTTTTG TGCCTTTCAA 
    AACGGCTTAC ATTAACAATA TTGGTGATGA ACTCTCTACG TGTGCTCTCT 
    TATGTACACC TAAAATTGAG GCAAATGAAT TAGAGACTGG AGAGTTGGTC 
    ATGCTTTCTA GGGTATGTTA TTTTTTTTAC CTTAAAAGCG TTTTAAATGG 
    TTTTTTTCTT TTGACACTAT GCATTGTTAA TCTAAAAATA ACTTCTGTTT 
    TTTTTATGTA GGTATTAAGA CATGACACCA ACCGTTATTA CNAACACTNG 
    GAACATCTTC ACGTAACTCT TCTATGTTGT ACTTGTTTTT GAGCCTTTAA 
    CCAAACTNTT TTTTTTTTTT TCNNCNAAAA AAAAAAAACC TTTTNGTTTT 
    NNAAAAAAAA GTTNTAANGG NNGGGNCCAA AANANTTACC NCNTTTATTT 
    NAAAAAAAAN NGGGAATTTT TTTTNNCAAA AAAAAAAAAA AANTTNNCTT 
    TNAAAAAAAA AAAANNTTTC NCCNTTNNNT TTTATNTAAA ACAATNTTTA 
    ANCCNTNNAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 199992 [Map]; Strand: w
      • AT4G00440.3 - [+] show detail - Protein of unknown function (DUF3741)
        Distance: 1413; Region: intergenic
      • AT4G00450.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -2424; Region: intergenic
    Flanking Genome Sequence: 11-2636-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    GCGGCCGGAC GAGCTCCATT TTCGTAAAGA CCGTTGTTGT AATATTTTTG 
    TAAATGAGAG ACTTTCTCTC ATTTTTTGAG AAATGTTCAT GATAAATTTG 
    TTATTTATTA TTATATTTTT ATTTTTGAAA ATGAAAGACT ATGGTGAAAG 
    ACCACCATTG CAGATTGCTC TTAGATAAAG ATTAGTATCA ATACTTATCC 
    CAACATTTTC TATGGCAATG TTGTCAATTG CAAGCATTAT GTCAAAAGGG 
    CACATAATCT TGTGAGCACT TGAGAGAGAG TTGATTCTCT TGATTTCTAC 
    TCTTGTCATT TAAGGGACCA CCTTGGACAA GTTATGAACA TCTATGTTTA 
    ATATAACTTC AAACATCAAG CCCAATGAAC TCAAGGAAAG AAGAAATAAA 
    CTGCATCACA ACGCATGTTG GAATTACAGA GGTGCACAAG ACCACAAAGT 
    AAATGTTAGA GAAACCCAAT TTCAAATTAG GCATAAGCAC AAAGTAAATA 
    TCTTATTTTA TTTTTTTAGT TGAAAGTATT TTAGATTCAT GTTTTTTTTT 
    CATTAGTATT AAAAATCATG TTAAAATAAA ATAAAAAATC GTCGTTTTTG 
    TATTTAAATT ACCCGTTATT ATTTAATATT ATCTATTACT TTCATTCNCT 
    TTTTATTATT CAAATCCAAN AACGTGAGAT ATAANAAAAT GGANGGTANT 
    AAAATTAAAT NGCACCGACT TTTTTTAAAG G

AT4G00440.3

Model type
Protein coding
Short Description
Protein of unknown function (DUF3741)
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (TAIR:AT2G45900.1); Has 1283 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 77; Metazoa - 265; Fungi - 74; Plants - 239; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00450.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Curator Summary
Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
Computational Description
CENTER CITY (CCT); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: photoperiodism, flowering, regulation of development, heterochronic, regulation of radial pattern formation; LOCATED IN: mediator complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med12 (InterPro:IPR019035); Has 216 Blast hits to 184 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 65; Plants - 86; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR