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11-1628-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4787441 [Map]; Strand: c
      • AT5G14800.1 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: 0; Region: exon1 (CDS)
      • AT5G14800.2 - [+] show detail - pyrroline-5- carboxylate (P5C) reductase
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-1628-1 - 5-prime edge 
    CTCCTAATCG TATCTGCACC GCCGTTCACT CAAATCTCAA TCGCCGTGAT 
    GTCTTCGAAT CCTTTGGCGT CAATGTCTTC TCCACTAGCG AAGAAGTAAG 
    TTCTTTTTCA ATGTCTTGTT GTTGTTGTTG TGGTGATGAA CTAAATTGAG 
    ATTGACGATC TTCAAAAAAA TGACAGGTTG TTAAAGAAAG CGATGTTGTC 
    ATATTCTCTG TGAAACCTCA AGTTGGTATA TATATTTCTT ACCTATCCAT 
    TGATTATATG ATTGATTCAT CAATGTAATT TTGTGTTGAC TTAAAGTTGT 
    ACCTTTCATA TGATGTAGTT AAGAAGGCTG TCACAGAATT AAAGTCGAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 5658985 [Map]; Strand: w
      • AT2G13580.1 - [+] show detail - pseudogene, similar to OSJNBa0072K14.8, blastp match of 34% identity and 3.7...
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 11-1628-1 - 3-prime edge 
    NTTNNGANGA TCCNNTCCCG ANNGCCAGNA CCNNTCTANC TCTCCTGCCC 
    GCCATTTTAC CNGNTCCGAT NAATCCTACC TTGAAACTCT CCGCCGGAAT 
    CTAGAAGAAT CTCCATNTGG ANAATTTAAC CGGGCCCGGC GTGGCGAGAT 
    ACANTCGGAC GGGTGAGCCT GACGANCTGC TTGANACNGG CGANCTGNNG 
    AGCTACNTTG AGACGGACCG GCTGACGAGA TGCTTCACAC GGGTGAGCTG 
    ACNAGCTGCT TCAGACGGGT GAGCTGACGA GCGTGCTTCA TACGGGCCGG 
    CTGGCCGAGA TACTTCANAC NGGTGAGCTG ACGAGCTGCT TGAGACGGNC 
    GAGCTGATGA GCTACTTGNG ACGGACCGGC TGACNAGATG CTTCAGACGG 
    GTGATCTGAC GANCTGCTTA GAGACNGGCC GGNTGGCTAA NATACTNTCN 
    GACNGGGTGA NCTGACNAGN TGNTTGNTAA CGGGNGAACN TATGANCTNC 
    TTNAGACNGA NCNNGCTGAC NAGATGCTTT NNANGGGTGA NCTTGACAGA 
    GCTTNCNTNA NACNGGGCNC NNCTTGGNAG AGATTNTTCC NANCGGTGNA 
    NANAACGANC ATGNTCGANA ACTGGGNNGT CTGTCNANNT ACCTTTCGNT 
    NGNNNNNCCT NACNANCTTT CTCTNTGGNN NTTAANNTGT TCTTANAAGN 
    CTTANCCCTT TNGTACANGA TANNCCTCNN TCCNGATTGN TAGCNTTTTG 
    ANCCGGGTAN

AT2G13580.1

Model type
Pseudogene
Computational Description
pseudogene, similar to OSJNBa0072K14.8, blastp match of 34% identity and 3.7e-06 P-value to GP|21740743|emb|CAD40552.1||AL606621 OSJNBa0072K14.8 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR

AT5G14800.1

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7885 Blast hits to 7882 proteins in 2434 species: Archae - 115; Bacteria - 5234; Metazoa - 373; Fungi - 241; Plants - 70; Viruses - 0; Other Eukaryotes - 1852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14800.2

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7429 Blast hits to 7426 proteins in 2378 species: Archae - 102; Bacteria - 5104; Metazoa - 368; Fungi - 229; Plants - 70; Viruses - 0; Other Eukaryotes - 1556 (source: NCBI BLink).
Link
InterPro Scan - TAIR