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11-0756-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11135043 [Map]; Strand: w
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0756-1 - 5-prime edge 
    NTCAANATAC NNATNATGGA CGAAGGGCCT TGTNACAATG AAAGCCTTAT 
    AATCNTGTNN TCATNATCCA CAGGCANCAG NTGNATGNTG GANTATNTCT 
    GNAGGGCACN CANNNCCANC NNCCNCAACA NCNNACTTAN NTTTTATAGC 
    CTTAAAAAGG TTTTGATTTT TGCAAGAAGA AGATGAAGCC TTACTTGTTG 
    ACAAGTTGTT TCTATCTCCA ATCTTGAAAT GAGAAATCAA AGGTTCTTGA 
    TTATCATCGG ATAACAAAAC ACTGCTTGTG GTGAGATCAA ATGTAATCTC 
    TGGCCATTGA TCTGATAGAT AACAAATACC TTCTACAACT CCTAGAACTA 
    CTCTTAACCT TCTTCTCCAT GATAAAGCCA TTGACGAACT TAACCAAGTC 
    TCANCATTNT CACCTTGAAT CCATTCTGTA ACCAAAGCTN TNATGTTTNT 
    NCTATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11134937 [Map]; Strand: w
      • AT4G20780.1 - [+] show detail - calmodulin like 42
        Distance: -967; Region: promoter
      • AT4G20790.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 11-0756-1 - 3-prime edge 
    ATCTTGAGTA TATAAGAGTT CATTATCCGG ATAATCTAGA GAGAGTGATT 
    GATGAGAAGA TGAAGATTGA GGGGAGAACA TTTGATCAAG TTAAGCAAGC 
    CATTACGCTA GGACTGATGT GTACTGATAT AATACCACCA TTAAAGCAAC 
    CAAGCT

AT4G20780.1

Model type
Protein coding
Short Description
calmodulin like 42
Curator Summary
Calcium sensor involved in trichome branching.
Computational Description
calmodulin like 42 (CML42); FUNCTIONS IN: calcium ion binding; INVOLVED IN: trichome branching; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin like 43 (TAIR:AT5G44460.1); Has 15351 Blast hits to 11255 proteins in 1265 species: Archae - 0; Bacteria - 33; Metazoa - 5903; Fungi - 3155; Plants - 4145; Viruses - 2; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20790.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G23950.1); Has 22866 Blast hits to 21354 proteins in 341 species: Archae - 0; Bacteria - 11; Metazoa - 712; Fungi - 3; Plants - 21851; Viruses - 23; Other Eukaryotes - 266 (source: NCBI BLink).
Link
InterPro Scan - TAIR