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11-0439-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 56433 [Map]; Strand: w
      • AT4G00140.1 - [+] show detail - Calcium-binding EF-hand family protein
        Distance: -2984; Region: intergenic
      • AT4G00150.1 - [+] show detail - GRAS family transcription factor
        Distance: 766; Region: intergenic
    Flanking Genome Sequence: 11-0439-1 - 3-prime edge 
    GGTTGGATAC AGACACATTT GATTGAATGT GAATAGTTTA GTTTTGACAG 
    ATCATAAGCC GTGTCCTCAA GCAGAAGACC GGTCGTGATC GGTCAATCTA 
    CACGTGTACG GCAGAAACAC ATGTGTCGTT TCCCTGTGAG AGATGATCAA 
    CCAAATCAAC GGTCAGTTTT TGTCAACTAA TGTGTGTATT GATTTGTAAC 
    ATGCCTACGT GAACATAAGC TAGTCACGCA ACAAGCAAGG CCTGGGTCAC 
    GCGCGCTCGG CTCCACTAAG ACGCGCCGAC GTAGTCACTC ATCATATATC 
    ACATGTCTAG ATTCAAATGG TAACCGTTTG ATGAGCGCAG TAAGTAGAAA 
    CATTGACCGG TCCAGGCGAG GTCTAGCAAA TACTATTAGA ATTAAAATTG 
    ATGTAATCAA TCACTGATAA ATACTATTAG AACTACTCTA CTTTACACTC 
    ACGTATTCCA TCNTTTAATA TACATACCGT GAGTGTAAAN TATNTCTTNA 
    CAATTNATTT TTGAAAATAG NTTTTAACCN ATAGCNAATG CCTATGTTNC 
    CAATGGGGTA GACNGGACTG ATCNCACNTT NGAAGNATAC TNTNGATNAT 
    ATATGGACNT GGGAAATNCA TNTTACAAAG CTATCAAACT TNNTNCTTTC 
    TTTTTTTGTG NGTTNNCNGG GGNTACTNTT TCANNTNNTN TGGNTTTGNG 
    ANNTNNAATT A

AT4G00140.1

Model type
Protein coding
Short Description
Calcium-binding EF-hand family protein
Computational Description
embryo sac development arrest 34 (EDA34); INVOLVED IN: polar nucleus fusion; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: calmodulin-related (TAIR:AT1G73440.1); Has 80 Blast hits to 56 proteins in 14 species: Archae - 3; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00150.1

Model type
Protein coding
Short Description
GRAS family transcription factor
Computational Description
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR